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6DZ4

Crystal structure of Salmonella typhimurium Tryptophan Synthase with sodium ion at the metal coordination site and (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine at the beta-site

Functional Information from GO Data
ChainGOidnamespacecontents
A0000162biological_processtryptophan biosynthetic process
A0004834molecular_functiontryptophan synthase activity
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006568biological_processtryptophan metabolic process
A0016829molecular_functionlyase activity
B0000162biological_processtryptophan biosynthetic process
B0004834molecular_functiontryptophan synthase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006568biological_processtryptophan metabolic process
B0016829molecular_functionlyase activity
B0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue CL A 301
ChainResidue
AHIS92
APRO93
ATHR94
AILE95
AHOH592

site_idAC2
Number of Residues3
Detailsbinding site for residue CL A 302
ChainResidue
AARG225
BCL407
BHOH758

site_idAC3
Number of Residues3
Detailsbinding site for residue DMS A 303
ChainResidue
AHOH499
AHOH549
APHE82

site_idAC4
Number of Residues4
Detailsbinding site for residue DMS A 304
ChainResidue
AGLU5
AILE148
AALA149
AHOH555

site_idAC5
Number of Residues2
Detailsbinding site for residue DMS A 305
ChainResidue
AASP60
ATYR175

site_idAC6
Number of Residues2
Detailsbinding site for residue DMS A 306
ChainResidue
AASN12
AGLU16

site_idAC7
Number of Residues22
Detailsbinding site for residue KOU B 401
ChainResidue
BHIS86
BLYS87
BTHR110
BGLY111
BALA112
BGLY113
BGLN114
BHIS115
BTHR190
BGLY232
BGLY233
BGLY234
BSER235
BASN236
BALA302
BGLY303
BASP305
BGLU350
BSER377
BHOH646
BHOH677
BHOH681

site_idAC8
Number of Residues5
Detailsbinding site for residue NA B 402
ChainResidue
BTHR66
BTHR69
BTHR71
BHOH693
BHOH824

site_idAC9
Number of Residues5
Detailsbinding site for residue NA B 403
ChainResidue
BGLY232
BPHE306
BSER308
BHOH584
BHOH690

site_idAD1
Number of Residues2
Detailsbinding site for residue CL B 405
ChainResidue
BLYS219
BGLU220

site_idAD2
Number of Residues2
Detailsbinding site for residue CL B 406
ChainResidue
BGLY274
BDMS411

site_idAD3
Number of Residues4
Detailsbinding site for residue CL B 407
ChainResidue
AVAL224
AARG225
ACL302
BHOH755

site_idAD4
Number of Residues2
Detailsbinding site for residue CL B 409
ChainResidue
APRO138
BLYS283

site_idAD5
Number of Residues4
Detailsbinding site for residue DMS B 410
ChainResidue
BGLN42
BALA46
BHOH902
BHOH939

site_idAD6
Number of Residues7
Detailsbinding site for residue DMS B 411
ChainResidue
BLEU271
BASN317
BARG363
BGLU364
BCL406
BHOH527
BHOH559

site_idAD7
Number of Residues5
Detailsbinding site for residue DMS B 412
ChainResidue
BSER143
BPRO144
BPHE385
BHIS388
BHOH596

site_idAD8
Number of Residues4
Detailsbinding site for residue DMS B 413
ChainResidue
BILE262
BHIS267
BHIS273
BHOH615

site_idAD9
Number of Residues2
Detailsbinding site for residue DMS B 414
ChainResidue
BGLN36
BLYS37

site_idAE1
Number of Residues3
Detailsbinding site for residue DMS B 415
ChainResidue
BTYR8
BGLY10
BHOH899

site_idAE2
Number of Residues4
Detailsbinding site for residue DMS B 416
ChainResidue
BTHR3
BLEU4
BLEU5
BASN6

site_idAE3
Number of Residues6
Detailsbinding site for residue DMS B 417
ChainResidue
BHIS357
BGLU364
BHOH501
BHOH621
BHOH879
BHOH954

Functional Information from PROSITE/UniProt
site_idPS00167
Number of Residues14
DetailsTRP_SYNTHASE_ALPHA Tryptophan synthase alpha chain signature. LELGvPFSDPLADG
ChainResidueDetails
ALEU48-GLY61

site_idPS00168
Number of Residues15
DetailsTRP_SYNTHASE_BETA Tryptophan synthase beta chain pyridoxal-phosphate attachment site. LlHgGAHKtNqvLgQ
ChainResidueDetails
BLEU80-GLN94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine
ChainResidueDetails
BLYS87
AASP60

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 383
ChainResidueDetails
BLYS87electron pair acceptor, electron pair donor, nucleofuge, nucleophile, proton acceptor, proton donor
BGLU109
BSER377hydrogen bond donor

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PDB entries from 2024-11-06

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