Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DVL

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with DDK-115

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AHBG804
AHOH930

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
ALEU634
AASP610
AASP612
AHIS614
ASER633

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH969
AHOH982

site_idAC4
Number of Residues16
Detailsbinding site for residue HBG A 804
ChainResidue
AHIS463
APRO464
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASN645
AASP705
AGLY743
ATYR745
AZN801
AHOH908
AHOH930
AHOH937

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BHBG804
BHOH914

site_idAC6
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAC7
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH952
BHOH964

site_idAC8
Number of Residues14
Detailsbinding site for residue HBG B 804
ChainResidue
BHIS463
BPRO464
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BGLY743
BTYR745
BZN801
BHOH906
BHOH914

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon