Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003964 | molecular_function | RNA-directed DNA polymerase activity |
A | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
A | 0006278 | biological_process | RNA-templated DNA biosynthetic process |
B | 0003964 | molecular_function | RNA-directed DNA polymerase activity |
B | 0006278 | biological_process | RNA-templated DNA biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | binding site for residue K5C A 601 |
Chain | Residue |
A | LEU100 |
A | PHE227 |
A | TRP229 |
A | HIS235 |
A | PRO236 |
A | TYR318 |
A | HOH762 |
B | PRO95 |
A | PRO101 |
A | LYS103 |
A | LYS104 |
A | SER105 |
A | VAL106 |
A | VAL179 |
A | TYR181 |
A | TYR188 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue MG A 602 |
Chain | Residue |
A | ASP443 |
A | ASP549 |
A | HOH707 |
A | HOH708 |
A | HOH805 |
A | HOH848 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 603 |
Chain | Residue |
A | MET41 |
A | LYS73 |
A | TYR146 |
A | PRO150 |
A | GLN151 |
A | HOH825 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 604 |
Chain | Residue |
A | LYS331 |
A | GLY333 |
A | GLN334 |
A | HOH732 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 605 |
Chain | Residue |
A | LYS476 |
A | SER515 |
A | GLU516 |
A | LEU517 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 606 |
Chain | Residue |
A | TYR427 |
A | GLN428 |
A | LEU525 |
A | LYS528 |
A | GLU529 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue EDO A 607 |
Chain | Residue |
A | LYS166 |
A | PRO170 |
A | TRP212 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue EDO A 608 |
Chain | Residue |
A | ARG463 |
A | ASP488 |
A | GLY490 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue EDO A 609 |
Chain | Residue |
A | THR473 |
A | ASN474 |
A | GLN475 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue EDO A 610 |
Chain | Residue |
A | SER268 |
A | TYR339 |
A | LYS353 |
A | LYS374 |
A | HOH864 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue EDO A 611 |
Chain | Residue |
A | LEU425 |
A | TRP426 |
A | TYR427 |
A | GLN509 |
A | ASP511 |
A | HOH826 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue EDO A 612 |
Chain | Residue |
A | LEU486 |
A | SER489 |
A | GLN524 |
A | LYS528 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue EDO A 613 |
Chain | Residue |
A | GLU404 |
A | TYR405 |
A | TRP406 |
A | GLN507 |
A | GLN509 |
B | LYS424 |
B | SO4503 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue EDO A 614 |
Chain | Residue |
A | ARG277 |
A | GLN334 |
A | ARG356 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue EDO A 615 |
Chain | Residue |
A | TYR532 |
A | LEU533 |
A | ALA534 |
A | TRP535 |
A | HOH792 |
B | LYS259 |
B | LEU425 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue EDO A 616 |
Chain | Residue |
A | PRO433 |
A | VAL435 |
A | LYS530 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue EDO A 617 |
Chain | Residue |
A | GLU370 |
A | GLN373 |
A | LYS374 |
A | THR377 |
A | HOH736 |
B | GLU396 |
site_id | AD9 |
Number of Residues | 2 |
Details | binding site for residue EDO A 618 |
Chain | Residue |
A | VAL417 |
A | ASN418 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue EDO A 619 |
Chain | Residue |
A | THR377 |
A | HOH725 |
B | THR400 |
B | DMS501 |
B | EDO511 |
B | HOH626 |
site_id | AE2 |
Number of Residues | 8 |
Details | binding site for residue DMS B 501 |
Chain | Residue |
A | ILE380 |
A | EDO619 |
B | THR27 |
B | LYS30 |
B | THR400 |
B | TRP401 |
B | THR403 |
B | GLU404 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 502 |
Chain | Residue |
B | GLU53 |
B | TYR56 |
B | LYS126 |
B | HOH622 |
site_id | AE4 |
Number of Residues | 8 |
Details | binding site for residue SO4 B 503 |
Chain | Residue |
A | THR403 |
A | GLU404 |
A | TYR405 |
A | EDO613 |
B | LYS331 |
B | GLN332 |
B | GLY333 |
B | LYS424 |
site_id | AE5 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 504 |
Chain | Residue |
A | GLU138 |
A | GLN500 |
A | TRP535 |
B | TRP266 |
B | GLN269 |
B | TRP426 |
B | HOH675 |
site_id | AE6 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 505 |
Chain | Residue |
B | LYS275 |
B | VAL276 |
B | ARG277 |
site_id | AE7 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 506 |
Chain | Residue |
B | HIS235 |
B | TRP239 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue EDO B 507 |
Chain | Residue |
A | GLU6 |
A | LYS166 |
B | LYS49 |
B | ILE50 |
B | HOH719 |
B | HOH721 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue EDO B 508 |
Chain | Residue |
B | GLU328 |
B | ILE329 |
B | GLN330 |
B | PRO392 |
B | PRO421 |
site_id | AF1 |
Number of Residues | 4 |
Details | binding site for residue EDO B 509 |
Chain | Residue |
B | VAL75 |
B | PHE77 |
B | GLY152 |
B | ILE411 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue EDO B 510 |
Chain | Residue |
B | TYR183 |
B | LYS385 |
B | THR386 |
B | HOH642 |
site_id | AF3 |
Number of Residues | 5 |
Details | binding site for residue EDO B 511 |
Chain | Residue |
A | EDO619 |
B | TRP24 |
B | GLU399 |
B | THR403 |
B | HOH626 |
site_id | AF4 |
Number of Residues | 4 |
Details | binding site for residue EDO B 512 |
Chain | Residue |
B | TYR339 |
B | GLY352 |
B | LYS353 |
B | TYR354 |
site_id | AF5 |
Number of Residues | 4 |
Details | binding site for residue EDO B 513 |
Chain | Residue |
A | TRP88 |
B | LYS20 |
B | LYS22 |
B | EDO516 |
site_id | AF6 |
Number of Residues | 5 |
Details | binding site for residue EDO B 514 |
Chain | Residue |
B | TYR232 |
B | ARG358 |
B | GLU370 |
B | LYS374 |
B | GLN407 |
site_id | AF7 |
Number of Residues | 4 |
Details | binding site for residue EDO B 515 |
Chain | Residue |
B | PRO19 |
B | LYS20 |
B | GLU79 |
B | ARG83 |
site_id | AF8 |
Number of Residues | 6 |
Details | binding site for residue EDO B 516 |
Chain | Residue |
A | TRP88 |
B | LYS22 |
B | GLN23 |
B | ASN57 |
B | THR131 |
B | EDO513 |
site_id | AF9 |
Number of Residues | 6 |
Details | binding site for residue EDO B 517 |
Chain | Residue |
B | TYR342 |
B | PRO345 |
B | PHE346 |
B | ASN348 |
B | TYR427 |
B | HOH680 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | BINDING: |
Chain | Residue | Details |
B | ASP110 | |
B | ASP185 | |
B | ASP186 | |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | SITE: Essential for RT p66/p51 heterodimerization |
Chain | Residue | Details |
B | TRP401 | |
B | TRP414 | |
A | ASP498 | |
A | ASP549 | |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | SITE: Essential for RT p66/p51 heterodimerization |
Chain | Residue | Details |
A | TRP401 | |
A | TRP414 | |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | SITE: Cleavage; by viral protease; partial |
Chain | Residue | Details |
A | PHE440 | |