6DQ9
Linked KDM5A JMJ Domain Bound to the Covalent Inhibitor N69 i.e. [2-((3-acrylamidophenyl)(2-(piperidin-1-yl)ethoxy)methyl)thieno[3,2-b]pyridine-7-carboxylic acid]
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 15 |
| Details | binding site for residue H74 A 601 |
| Chain | Residue |
| A | TYR409 |
| A | HIS571 |
| A | MN602 |
| A | HOH750 |
| A | HOH788 |
| A | HOH806 |
| A | HOH830 |
| A | ASP412 |
| A | TYR472 |
| A | PHE480 |
| A | CYS481 |
| A | HIS483 |
| A | LYS501 |
| A | TRP503 |
| A | LEU536 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue MN A 602 |
| Chain | Residue |
| A | HIS483 |
| A | GLU485 |
| A | HIS571 |
| A | H74601 |
| A | HOH719 |
| A | HOH830 |
| site_id | AC3 |
| Number of Residues | 10 |
| Details | binding site for residue GOL A 603 |
| Chain | Residue |
| A | MET380 |
| A | PRO381 |
| A | GLU485 |
| A | ASP486 |
| A | HIS487 |
| A | TRP488 |
| A | LEU532 |
| A | HOH702 |
| A | HOH724 |
| A | HOH843 |
| site_id | AC4 |
| Number of Residues | 8 |
| Details | binding site for residue DMS A 604 |
| Chain | Residue |
| A | ARG76 |
| A | LEU77 |
| A | GLU79 |
| A | SER479 |
| A | CYS481 |
| A | ILE539 |
| A | HOH742 |
| A | HOH880 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue DMS A 605 |
| Chain | Residue |
| A | ARG519 |
| A | ASP531 |
| A | HIS534 |
| A | GLN535 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 606 |
| Chain | Residue |
| A | GLU12 |
| A | ARG359 |
| A | GLU360 |
| A | TYR361 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 607 |
| Chain | Residue |
| A | TRP395 |
| A | PHE480 |
| A | TRP482 |
| A | ILE539 |
| A | MET540 |
| A | SER572 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 50 |
| Details | ZN_FING: PHD-type 1 => ECO:0000255|PROSITE-ProRule:PRU00146 |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:26645689, ECO:0000269|PubMed:27427228 |
| Chain | Residue | Details |
| A | TYR409 | |
| A | SER491 | |
| A | ASN493 | |
| A | LYS501 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26645689, ECO:0000305|PubMed:27214401, ECO:0000305|PubMed:27427228, ECO:0000305|PubMed:27499454 |
| Chain | Residue | Details |
| A | HIS483 | |
| A | HIS571 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | BINDING: BINDING => ECO:0000305|PubMed:26645689, ECO:0000305|PubMed:27214401, ECO:0000305|PubMed:27427228, ECO:0000305|PubMed:27499454 |
| Chain | Residue | Details |
| A | GLU485 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
| Chain | Residue | Details |
| A | SER464 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733 |
| Chain | Residue | Details |
| A | LEU451 |
