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6DPB

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 8 mM Mn2+ and 200 mM K+ for 40 s at 21 C

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MN A 201
ChainResidue
AASP71
AASP192
AHOH327
AHOH351
bC5
bHOH201

site_idAC2
Number of Residues5
Detailsbinding site for residue MN A 202
ChainResidue
BU4
bC5
AASP71
AGLU109
AASP132

site_idAC3
Number of Residues7
Detailsbinding site for residue MN A 203
ChainResidue
ALYS144
AASP163
AGLU166
AHOH302
AHOH323
AHOH342
AHOH426

site_idAC4
Number of Residues8
Detailsbinding site for residue K A 204
ChainResidue
AASP192
AARG195
ALYS196
AHOH366
AHOH370
bC5
bG6
bHOH201

site_idAC5
Number of Residues1
Detailsbinding site for residue IOD A 205
ChainResidue
ATYR83

site_idAC6
Number of Residues2
Detailsbinding site for residue IOD A 207
ChainResidue
AHOH474
AHOH476

site_idAC7
Number of Residues6
Detailsbinding site for residue GOL A 209
ChainResidue
AGLY76
AASN77
APRO78
CDG2
CDA3
bHOH204

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL A 210
ChainResidue
AHIS115
AARG118
ATYR119
AARG123
AGLU167
AASN170
AGOL211
AHOH311

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL A 211
ChainResidue
AHIS115
AARG118
AASN170
AGOL210
AHOH305
AHOH398

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO A 212
ChainResidue
ALYS143
ATHR173
ATYR174

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO A 213
ChainResidue
ALYS89
AGLU153
AALA156
AHOH354

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL A 214
ChainResidue
AGLU66
AARG123
ASER125
ALYS127
AHOH329

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO A 215
ChainResidue
ATHR148
AHOH320
CDT4
CDG5

site_idAD5
Number of Residues6
Detailsbinding site for residue K A 216
ChainResidue
AASP132
AGLU188
AHOH310
BU4
BHOH109
bC5

site_idAD6
Number of Residues4
Detailsbinding site for residue MN b 101
ChainResidue
CHOH207
bG6
bHOH202
bHOH205

site_idAD7
Number of Residues4
Detailsbinding site for residue K C 101
ChainResidue
CDT4
CDG5
CHOH205
CHOH210

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15989951
ChainResidueDetails
AASP71
AGLU109
AASP132
AASP192

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PDB entries from 2025-06-11

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