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6DOU

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 120 s at 21 C

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 201
ChainResidue
AASP71
AASP192
AHOH316
AHOH324
bC5
bHOH101

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 202
ChainResidue
BU4
bC5
AASP71
AGLU109
AASP132

site_idAC3
Number of Residues9
Detailsbinding site for residue RB A 203
ChainResidue
AASP192
AARG195
ALYS196
ARB205
AHOH343
bC5
bG6
bHOH101
bHOH102

site_idAC4
Number of Residues5
Detailsbinding site for residue RB A 204
ChainResidue
AASP132
AHOH308
BU4
BHOH111
bC5

site_idAC5
Number of Residues7
Detailsbinding site for residue RB A 205
ChainResidue
AGLU188
AASP192
ALYS196
ARB203
AHOH343
bC5
bHOH101

site_idAC6
Number of Residues3
Detailsbinding site for residue RB A 206
ChainResidue
ALYS121
AASN124
AHOH437

site_idAC7
Number of Residues2
Detailsbinding site for residue CL A 207
ChainResidue
ATYR83
AGOL213

site_idAC8
Number of Residues3
Detailsbinding site for residue CL A 208
ChainResidue
AHOH361
AHOH436
AHOH451

site_idAC9
Number of Residues3
Detailsbinding site for residue CL A 209
ChainResidue
AILE64
AHOH423
AHOH458

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL A 210
ChainResidue
AGLY76
AASN77
APRO78
CDG2
CDA3

site_idAD2
Number of Residues9
Detailsbinding site for residue GOL A 211
ChainResidue
AHIS115
AARG118
ATYR119
AGLU122
AARG123
AGLU167
AGOL213
AHOH301
AHOH388

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL A 212
ChainResidue
AGLU66
ASER125
ALYS127
AHOH314
AHOH320

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL A 213
ChainResidue
AHIS115
AARG118
AASN170
ACL207
AGOL211
AHOH356
AHOH397
AHOH424

site_idAD5
Number of Residues3
Detailsbinding site for residue EDO A 214
ChainResidue
ALYS143
ATHR173
ATYR174

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO A 215
ChainResidue
ATHR148
AHOH399
CDT4
CDG5
CEDO102

site_idAD7
Number of Residues5
Detailsbinding site for residue RB C 101
ChainResidue
CDT4
CDG5
CEDO102
CEDO103
CHOH208

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO C 102
ChainResidue
AEDO215
CDT4
CDG5
CRB101
CEDO103
CHOH213

site_idAD9
Number of Residues9
Detailsbinding site for residue EDO C 103
ChainResidue
ALYS196
BA1
BHOH110
CDG5
CDT6
CRB101
CEDO102
CHOH206
bG6

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15989951
ChainResidueDetails
AASP192
AASP71
AGLU109
AASP132

220472

PDB entries from 2024-05-29

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