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6DOT

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 5 mM Mg2+ and 200 mM Rb+ for 40 s at 21 C

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 201
ChainResidue
AASP71
AASP192
AHOH322
AHOH329
AHOH349
bC5

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 202
ChainResidue
AHOH373
BU4
bC5
AASP71
AGLU109
AASP132

site_idAC3
Number of Residues6
Detailsbinding site for residue RB A 203
ChainResidue
AASP192
AGLY194
AARG195
AHOH329
AHOH335
bG6

site_idAC4
Number of Residues6
Detailsbinding site for residue RB A 204
ChainResidue
ALYS121
AASN124
AHOH402
AHOH420
AHOH422
AHOH451

site_idAC5
Number of Residues1
Detailsbinding site for residue CL A 205
ChainResidue
ATYR83

site_idAC6
Number of Residues3
Detailsbinding site for residue CL A 206
ChainResidue
AHOH362
AHOH447
AHOH468

site_idAC7
Number of Residues4
Detailsbinding site for residue CL A 207
ChainResidue
AILE64
AHOH429
AHOH471
AHOH477

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 208
ChainResidue
AGLY76
AASN77
APRO78
CDG2
CDA3

site_idAC9
Number of Residues9
Detailsbinding site for residue GOL A 209
ChainResidue
AHIS115
AARG118
ATYR119
AARG123
AGLU167
AASN170
AGOL211
AHOH302
AHOH345

site_idAD1
Number of Residues7
Detailsbinding site for residue GOL A 210
ChainResidue
AGLU66
AARG123
ASER125
ALYS127
AHOH318
AHOH328
AHOH355

site_idAD2
Number of Residues8
Detailsbinding site for residue GOL A 211
ChainResidue
AHIS115
AARG118
AASN170
ATHR171
AGOL209
AHOH414
AHOH428
AHOH435

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO A 212
ChainResidue
ALYS143
ATHR173
ATYR174

site_idAD4
Number of Residues6
Detailsbinding site for residue GOL A 213
ChainResidue
ATHR148
AHOH305
AHOH327
CDT4
CDG5
CHOH202

site_idAD5
Number of Residues3
Detailsbinding site for residue RB C 101
ChainResidue
CDT4
CDG5
CHOH213

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15989951
ChainResidueDetails
AASP71
AGLU109
AASP132
AASP192

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PDB entries from 2024-07-24

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