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6DOE

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 420 s at 21 C

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004523molecular_functionRNA-DNA hybrid ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue MG A 201
ChainResidue
AASP71
AASP192
AHOH301
AHOH306
AHOH310
bC5

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 202
ChainResidue
BU4
bC5
AASP71
AGLU109
AASP132

site_idAC3
Number of Residues8
Detailsbinding site for residue K A 203
ChainResidue
AASP192
AGLY194
AARG195
ALYS196
AHOH301
AHOH331
bC5
bG6

site_idAC4
Number of Residues1
Detailsbinding site for residue IOD A 204
ChainResidue
ATYR83

site_idAC5
Number of Residues1
Detailsbinding site for residue IOD A 205
ChainResidue
APGE216

site_idAC6
Number of Residues3
Detailsbinding site for residue IOD A 206
ChainResidue
AILE64
AHOH423
AHOH458

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 208
ChainResidue
ALYS143
ATHR173
ATYR174
AHOH308
AHOH402

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 209
ChainResidue
ATHR148
AHOH324
AHOH355
CDT4
CDG5

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 210
ChainResidue
AILE80
APRO99
AHOH349

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO A 211
ChainResidue
ATRP65
AGLU66
ASER67
AASP87
ALYS127
AGOL215

site_idAD2
Number of Residues6
Detailsbinding site for residue GOL A 212
ChainResidue
AHIS115
AARG118
AASN170
AGOL213
AHOH315
AHOH376

site_idAD3
Number of Residues9
Detailsbinding site for residue GOL A 213
ChainResidue
AHIS115
ATYR119
AGLU122
AARG123
AGLU167
AASN170
AGOL212
AHOH379
AHOH396

site_idAD4
Number of Residues6
Detailsbinding site for residue GOL A 214
ChainResidue
AILE102
AVAL150
AASN152
AGLU154
AHOH325
CHOH206

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL A 215
ChainResidue
AGLU66
ASER125
ALYS127
AEDO211
AHOH335

site_idAD6
Number of Residues10
Detailsbinding site for residue PGE A 216
ChainResidue
AGLN134
ALYS180
ATRP181
AGLN182
ATHR183
AASP184
AIOD205
BA3
BU4
BHOH203

site_idAD7
Number of Residues5
Detailsbinding site for residue K A 217
ChainResidue
AASP132
BU4
BHOH211
bC5
bHOH103

site_idAD8
Number of Residues3
Detailsbinding site for residue K C 101
ChainResidue
CDT4
CDG5
CHOH207

site_idAD9
Number of Residues6
Detailsbinding site for residue GOL C 102
ChainResidue
AASN77
AHOH313
BHOH209
CDG2
CDA3
CHOH213

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:15989951
ChainResidueDetails
AASP71
AGLU109
AASP132
AASP192

220113

PDB entries from 2024-05-22

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