| Chain | GOid | namespace | contents |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0001841 | biological_process | neural tube formation |
| A | 0005113 | molecular_function | patched binding |
| A | 0005119 | molecular_function | smoothened binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005794 | cellular_component | Golgi apparatus |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0005901 | cellular_component | caveola |
| A | 0005929 | cellular_component | cilium |
| A | 0007165 | biological_process | signal transduction |
| A | 0007286 | biological_process | spermatid development |
| A | 0007420 | biological_process | brain development |
| A | 0008158 | molecular_function | hedgehog receptor activity |
| A | 0008201 | molecular_function | heparin binding |
| A | 0008589 | biological_process | regulation of smoothened signaling pathway |
| A | 0009410 | biological_process | response to xenobiotic stimulus |
| A | 0009612 | biological_process | response to mechanical stimulus |
| A | 0009887 | biological_process | animal organ morphogenesis |
| A | 0009953 | biological_process | dorsal/ventral pattern formation |
| A | 0010875 | biological_process | positive regulation of cholesterol efflux |
| A | 0015485 | molecular_function | cholesterol binding |
| A | 0016020 | cellular_component | membrane |
| A | 0016485 | biological_process | protein processing |
| A | 0021532 | biological_process | neural tube patterning |
| A | 0021997 | biological_process | neural plate axis specification |
| A | 0030326 | biological_process | embryonic limb morphogenesis |
| A | 0030332 | molecular_function | cyclin binding |
| A | 0030496 | cellular_component | midbody |
| A | 0030666 | cellular_component | endocytic vesicle membrane |
| A | 0030850 | biological_process | prostate gland development |
| A | 0032355 | biological_process | response to estradiol |
| A | 0032526 | biological_process | response to retinoic acid |
| A | 0032880 | biological_process | regulation of protein localization |
| A | 0035108 | biological_process | limb morphogenesis |
| A | 0040015 | biological_process | negative regulation of multicellular organism growth |
| A | 0043279 | biological_process | response to alkaloid |
| A | 0044294 | cellular_component | dendritic growth cone |
| A | 0044295 | cellular_component | axonal growth cone |
| A | 0044877 | molecular_function | protein-containing complex binding |
| A | 0045177 | cellular_component | apical part of cell |
| A | 0045211 | cellular_component | postsynaptic membrane |
| A | 0045668 | biological_process | negative regulation of osteoblast differentiation |
| A | 0045879 | biological_process | negative regulation of smoothened signaling pathway |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| A | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| A | 0048471 | cellular_component | perinuclear region of cytoplasm |
| A | 0048745 | biological_process | smooth muscle tissue development |
| A | 0051782 | biological_process | negative regulation of cell division |
| A | 0060037 | biological_process | pharyngeal system development |
| A | 0060170 | cellular_component | ciliary membrane |
| A | 0061053 | biological_process | somite development |
| A | 0071397 | biological_process | cellular response to cholesterol |
| A | 0071679 | biological_process | commissural neuron axon guidance |
| A | 0072205 | biological_process | metanephric collecting duct development |
| A | 0072659 | biological_process | protein localization to plasma membrane |
| A | 0097108 | molecular_function | hedgehog family protein binding |
| A | 0097421 | biological_process | liver regeneration |
