6DLU
Cryo-EM of the GMPPCP-bound human dynamin-1 polymer assembled on the membrane in the constricted state
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 22 |
Details | binding site for residue GCP B 801 |
Chain | Residue |
B | GLN40 |
B | THR65 |
B | GLY139 |
B | LYS206 |
B | ASP208 |
B | LEU209 |
B | VAL235 |
B | ASN236 |
B | ARG237 |
B | SER238 |
B | GLN239 |
B | SER41 |
B | ILE242 |
B | MG802 |
P | ASP211 |
B | GLY43 |
B | LYS44 |
B | SER45 |
B | SER46 |
B | ARG59 |
B | GLY60 |
B | VAL64 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue MG B 802 |
Chain | Residue |
B | SER45 |
B | THR65 |
B | GCP801 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue MG P 802 |
Chain | Residue |
P | SER45 |
P | THR65 |
P | GCP801 |
site_id | AC4 |
Number of Residues | 22 |
Details | binding site for Di-peptide GCP P 801 and LYS P 44 |
Chain | Residue |
B | ASP211 |
P | VAL37 |
P | GLY39 |
P | SER41 |
P | GLY43 |
P | SER45 |
P | SER46 |
P | VAL47 |
P | LEU48 |
P | ARG59 |
P | GLY60 |
P | VAL64 |
P | THR65 |
P | LEU137 |
P | GLY139 |
P | LYS206 |
P | ASP208 |
P | ASN236 |
P | ARG237 |
P | SER238 |
P | GLN239 |
P | MG802 |
Functional Information from PROSITE/UniProt
site_id | PS00410 |
Number of Residues | 10 |
Details | G_DYNAMIN_1 Dynamin-type guanine nucleotide-binding (G) domain signature. LPRGSGIVTR |
Chain | Residue | Details |
B | LEU57-ARG66 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:20428113, ECO:0000269|PubMed:26612256, ECO:0007744|PDB:5D3Q |
Chain | Residue | Details |
B | SER41 | |
P | SER41 |
site_id | SWS_FT_FI2 |
Number of Residues | 8 |
Details | BINDING: BINDING => ECO:0000269|PubMed:20428113, ECO:0000269|PubMed:26612256, ECO:0007744|PDB:2X2E, ECO:0007744|PDB:2X2F, ECO:0007744|PDB:5D3Q |
Chain | Residue | Details |
B | GLY43 | |
B | SER45 | |
B | LYS206 | |
B | ASP208 | |
P | GLY43 | |
P | SER45 | |
P | LYS206 | |
P | ASP208 |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | BINDING: BINDING => ECO:0000269|PubMed:20428113, ECO:0000269|PubMed:26612256, ECO:0000269|PubMed:30069048, ECO:0007744|PDB:2X2E, ECO:0007744|PDB:2X2F, ECO:0007744|PDB:5D3Q, ECO:0007744|PDB:6DLU |
Chain | Residue | Details |
B | LYS44 | |
P | GLN239 | |
B | SER46 | |
B | ASN236 | |
B | ARG237 | |
B | GLN239 | |
P | LYS44 | |
P | SER46 | |
P | ASN236 | |
P | ARG237 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:26612256, ECO:0007744|PDB:5D3Q |
Chain | Residue | Details |
B | ARG59 | |
P | ARG59 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:20428113, ECO:0007744|PDB:2X2E, ECO:0007744|PDB:2X2F |
Chain | Residue | Details |
B | GLY60 | |
P | GLY60 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:20428113, ECO:0000269|PubMed:26612256, ECO:0000269|PubMed:30069048, ECO:0007744|PDB:2X2E, ECO:0007744|PDB:5D3Q, ECO:0007744|PDB:6DLU |
Chain | Residue | Details |
B | ASP211 | |
P | ASP211 |
site_id | SWS_FT_FI7 |
Number of Residues | 4 |
Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P39053 |
Chain | Residue | Details |
B | TYR80 | |
B | TYR354 | |
P | TYR80 | |
P | TYR354 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine; alternate => ECO:0000250|UniProtKB:P39053 |
Chain | Residue | Details |
B | TYR125 | |
P | TYR125 |
site_id | SWS_FT_FI9 |
Number of Residues | 4 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P39053 |
Chain | Residue | Details |
B | SER306 | |
B | SER512 | |
P | SER306 | |
P | SER512 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P21575 |
Chain | Residue | Details |
B | SER347 | |
P | SER347 |