6DHU
Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT0911 from cocktail soak
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | binding site for residue GHM A 701 |
Chain | Residue |
A | TYR204 |
A | ASN516 |
A | HOH849 |
A | HIS263 |
A | LYS265 |
A | ASN283 |
A | SER399 |
A | SER400 |
A | PRO461 |
A | HIS493 |
A | LYS495 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue EDO A 702 |
Chain | Residue |
A | ILE355 |
A | GLY356 |
A | SER357 |
A | THR513 |
A | TRP522 |
A | GLY540 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue EDO A 703 |
Chain | Residue |
A | SER198 |
A | GLU337 |
A | TRP338 |
A | HOH905 |
A | HOH920 |
site_id | AC4 |
Number of Residues | 8 |
Details | binding site for residue EDO A 704 |
Chain | Residue |
A | THR484 |
A | LYS556 |
A | GLN557 |
A | TYR574 |
A | ASP575 |
A | LEU576 |
A | HOH833 |
A | HOH928 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue EDO A 705 |
Chain | Residue |
A | ILE305 |
A | LYS311 |
A | SER312 |
A | LYS320 |
A | HIS343 |
site_id | AC6 |
Number of Residues | 11 |
Details | binding site for residue GHM B 701 |
Chain | Residue |
B | TYR204 |
B | HIS263 |
B | LYS265 |
B | ASN283 |
B | SER399 |
B | SER400 |
B | PRO461 |
B | HIS493 |
B | LYS495 |
B | ASN516 |
B | HOH853 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue EDO B 702 |
Chain | Residue |
B | ILE355 |
B | GLY356 |
B | SER357 |
B | THR513 |
B | ALA515 |
B | TRP522 |
B | GLY540 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue EDO B 703 |
Chain | Residue |
B | ASP322 |
B | ASN369 |
B | HOH865 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue EDO B 704 |
Chain | Residue |
B | THR484 |
B | LYS556 |
B | GLN557 |
B | TYR574 |
B | LEU576 |
B | HOH832 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue EDO B 705 |
Chain | Residue |
B | LYS311 |
B | SER312 |
B | LYS320 |
B | HIS343 |
B | HOH1013 |
site_id | AD2 |
Number of Residues | 5 |
Details | binding site for residue EDO B 706 |
Chain | Residue |
B | ASN471 |
B | HIS474 |
B | ARG586 |
B | ILE589 |
B | HOH1032 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue EDO B 707 |
Chain | Residue |
B | GLU468 |
B | LYS469 |
B | GLN470 |
B | ASN471 |
B | TRP472 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | Region: {"description":"Interaction with DNA","evidences":[{"source":"PubMed","id":"12470949","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | Active site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"12470949","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15111055","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | Active site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"12470949","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15111055","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"12470949","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | Site: {"description":"Interaction with DNA","evidences":[{"source":"PubMed","id":"12470949","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |