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6DGI

The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
B0000166molecular_functionnucleotide binding
B0003824molecular_functioncatalytic activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008360biological_processregulation of cell shape
B0008716molecular_functionD-alanine-D-alanine ligase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 401
ChainResidue
AGLY90
ASER94
APRO108
AALA112
BTHR89
BSER94
BPRO108

site_idAC2
Number of Residues4
Detailsbinding site for residue ACT A 402
ChainResidue
AGLY166
AASN296
AGLU16
AGLU88

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 403
ChainResidue
AHOH501
AHOH506
AHOH521
AHOH524
AHOH535
BHOH557

site_idAC4
Number of Residues6
Detailsbinding site for residue GOL B 401
ChainResidue
BGLU16
BGLY84
BGLU88
BSER167
BASN296
BHOH529

site_idAC5
Number of Residues6
Detailsbinding site for residue MG B 402
ChainResidue
AHOH545
BHOH501
BHOH508
BHOH518
BHOH522
BHOH563

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGfpGETGdIQS
ChainResidueDetails
AHIS83-SER94

site_idPS00844
Number of Residues29
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. MklrHlSRIDFFltqegqiy....LnEVNTfPG
ChainResidueDetails
AMSE272-GLY300

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues116
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00047","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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