6DC2
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase C301S variant
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004601 | molecular_function | peroxidase activity |
| A | 0006091 | biological_process | generation of precursor metabolites and energy |
| A | 0016151 | molecular_function | nickel cation binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| A | 0042542 | biological_process | response to hydrogen peroxide |
| A | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050418 | molecular_function | hydroxylamine reductase activity |
| A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| A | 0098869 | biological_process | cellular oxidant detoxification |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004601 | molecular_function | peroxidase activity |
| B | 0006091 | biological_process | generation of precursor metabolites and energy |
| B | 0016151 | molecular_function | nickel cation binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| B | 0042542 | biological_process | response to hydrogen peroxide |
| B | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050418 | molecular_function | hydroxylamine reductase activity |
| B | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 0098869 | biological_process | cellular oxidant detoxification |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004601 | molecular_function | peroxidase activity |
| C | 0006091 | biological_process | generation of precursor metabolites and energy |
| C | 0016151 | molecular_function | nickel cation binding |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| C | 0042542 | biological_process | response to hydrogen peroxide |
| C | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0050418 | molecular_function | hydroxylamine reductase activity |
| C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| C | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| C | 0098869 | biological_process | cellular oxidant detoxification |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004601 | molecular_function | peroxidase activity |
| D | 0006091 | biological_process | generation of precursor metabolites and energy |
| D | 0016151 | molecular_function | nickel cation binding |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| D | 0042542 | biological_process | response to hydrogen peroxide |
| D | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0050418 | molecular_function | hydroxylamine reductase activity |
| D | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| D | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| D | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 A 701 |
| Chain | Residue |
| A | CYS51 |
| A | CYS54 |
| A | CYS59 |
| A | CYS74 |
| A | ARG84 |
| A | MET203 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue FES A 702 |
| Chain | Residue |
| B | CYS42 |
| B | CYS45 |
| B | THR50 |
| A | CYS42 |
| A | CYS45 |
| A | THR50 |
| site_id | AC3 |
| Number of Residues | 13 |
| Details | binding site for residue XCC A 703 |
| Chain | Residue |
| A | HIS266 |
| A | CYS302 |
| A | HIS319 |
| A | CYS340 |
| A | GLY447 |
| A | CYS448 |
| A | CYS478 |
| A | CYS519 |
| A | TYR553 |
| A | SER554 |
| A | LYS556 |
| A | FE704 |
| A | HOH848 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue FE A 704 |
| Chain | Residue |
| A | CYS302 |
| A | CYS519 |
| A | XCC703 |
| A | HOH848 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 705 |
| Chain | Residue |
| B | HOH942 |
| B | HOH1113 |
| B | HOH1159 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue MG A 706 |
| Chain | Residue |
| A | HOH997 |
| A | HOH1138 |
| A | HOH1189 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 B 701 |
| Chain | Residue |
| B | CYS51 |
| B | CYS54 |
| B | CYS59 |
| B | CYS74 |
| B | ARG84 |
| B | MET203 |
| site_id | AC8 |
| Number of Residues | 14 |
| Details | binding site for residue XCC B 702 |
| Chain | Residue |
| B | HIS266 |
| B | SER301 |
| B | CYS302 |
| B | HIS319 |
| B | CYS340 |
| B | GLY447 |
| B | CYS448 |
| B | CYS478 |
| B | CYS519 |
| B | TYR553 |
| B | SER554 |
| B | LYS556 |
| B | FE703 |
| B | HOH838 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue FE B 703 |
| Chain | Residue |
| B | CYS302 |
| B | CYS519 |
| B | XCC702 |
| B | HOH838 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 704 |
| Chain | Residue |
| B | ALA78 |
| B | ASP79 |
| B | GLY581 |
| B | SER582 |
| B | GLU583 |
| B | ASN584 |
| B | HOH823 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue MG B 705 |
| Chain | Residue |
| B | HOH828 |
| B | HOH1069 |
| B | HOH1150 |
| B | HOH1186 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 C 701 |
| Chain | Residue |
| C | CYS51 |
| C | CYS54 |
| C | CYS59 |
| C | CYS74 |
| C | ARG84 |
| C | MET203 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue FES C 702 |
| Chain | Residue |
| C | CYS42 |
| C | CYS45 |
| C | THR50 |
| D | CYS42 |
| D | CYS45 |
| D | THR50 |
| site_id | AD5 |
| Number of Residues | 13 |
| Details | binding site for residue XCC C 703 |
| Chain | Residue |
| C | HIS266 |
| C | SER301 |
| C | CYS302 |
| C | HIS319 |
| C | CYS340 |
| C | GLY447 |
| C | CYS448 |
| C | CYS478 |
| C | CYS519 |
| C | TYR553 |
| C | SER554 |
| C | FE704 |
| C | HOH925 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue FE C 704 |
| Chain | Residue |
| C | CYS302 |
| C | CYS519 |
| C | XCC703 |
| C | HOH925 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 705 |
| Chain | Residue |
| C | ILE295 |
| C | ASN296 |
| C | VAL297 |
| C | PRO314 |
| C | HOH810 |
| C | HOH918 |
| site_id | AD8 |
| Number of Residues | 7 |
| Details | binding site for residue GOL C 706 |
| Chain | Residue |
| C | ASP79 |
| C | GLY581 |
| C | SER582 |
| C | GLU583 |
| C | ASN584 |
| C | HOH944 |
| C | HOH960 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue GOL C 707 |
| Chain | Residue |
| C | CYS42 |
| C | PHE44 |
| C | ARG60 |
| D | PHE44 |
| D | ARG60 |
| site_id | AE1 |
| Number of Residues | 6 |
| Details | binding site for residue MG C 708 |
| Chain | Residue |
| C | HOH825 |
| C | HOH975 |
| C | HOH1023 |
| C | HOH1097 |
| C | HOH1157 |
| C | HOH1191 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 D 701 |
| Chain | Residue |
| D | CYS51 |
| D | CYS54 |
| D | CYS59 |
| D | CYS74 |
| D | ARG84 |
| D | MET203 |
| site_id | AE3 |
| Number of Residues | 13 |
| Details | binding site for residue XCC D 702 |
| Chain | Residue |
| D | HIS266 |
| D | CYS302 |
| D | HIS319 |
| D | CYS340 |
| D | GLY447 |
| D | CYS448 |
| D | CYS478 |
| D | CYS519 |
| D | TYR553 |
| D | SER554 |
| D | LYS556 |
| D | FE703 |
| D | HOH876 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue FE D 703 |
| Chain | Residue |
| D | CYS302 |
| D | CYS519 |
| D | XCC702 |
| D | HOH876 |
| site_id | AE5 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 704 |
| Chain | Residue |
| D | HOH872 |
| D | HOH975 |
| D | HOH985 |
| D | HOH1055 |
| D | HOH1092 |
