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6DAM

Crystal structure of lanthanide-dependent methanol dehydrogenase XoxF from Methylomicrobium buryatense 5G

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0016020cellular_componentmembrane
A0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
A0030288cellular_componentouter membrane-bounded periplasmic space
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue LA A 701
ChainResidue
AGLU197
AASN285
AASP327
AASP329
APQQ702

site_idAC2
Number of Residues23
Detailsbinding site for residue PQQ A 702
ChainResidue
ATHR179
ASER194
AGLY195
AGLY196
AGLU197
ATHR265
ATRP267
AASN285
AASP327
AASP329
AARG354
AASN420
ATRP506
AGLY569
ATRP570
ALA701
AHOH834
AHOH1062
AHOH1103
AGLU81
ACYS129
ACYS130
AARG135

site_idAC3
Number of Residues5
Detailsbinding site for residue NA A 703
ChainResidue
AASP224
AGLY246
ALYS247
AASP248
ASER249

Functional Information from PROSITE/UniProt
site_idPS00364
Number of Residues22
DetailsBACTERIAL_PQQ_2 Bacterial quinoprotein dehydrogenases signature 2. WgwysYDpelNLVYYgsGnpST
ChainResidueDetails
ATRP267-THR288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"Q9Z4J7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues15
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30132076","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6DAM","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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