6D9K
Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0004520 | molecular_function | DNA endonuclease activity |
| A | 0044355 | biological_process | clearance of foreign intracellular DNA |
| A | 0046872 | molecular_function | metal ion binding |
| F | 0003676 | molecular_function | nucleic acid binding |
| F | 0003677 | molecular_function | DNA binding |
| F | 0003723 | molecular_function | RNA binding |
| F | 0004520 | molecular_function | DNA endonuclease activity |
| F | 0044355 | biological_process | clearance of foreign intracellular DNA |
| F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | binding site for residue ACT A 801 |
| Chain | Residue |
| A | TYR111 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue MPD A 802 |
| Chain | Residue |
| A | GLU377 |
| A | ARG384 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 101 |
| Chain | Residue |
| A | LEU777 |
| A | HOH970 |
| C | U1 |
| C | A3 |
| C | HOH205 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue ACT F 801 |
| Chain | Residue |
| F | ARG384 |
| F | GLU377 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue ACT F 802 |
| Chain | Residue |
| F | ALA604 |
| F | LEU608 |
| H | HOH212 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue MG H 101 |
| Chain | Residue |
| F | LEU777 |
| F | HOH955 |
| H | U1 |
| H | A3 |
| H | HOH204 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | binding site for residue MPD H 102 |
| Chain | Residue |
| H | G11 |
| J | DC-7 |
| J | DC-6 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 624 |
| Details | Domain: {"description":"Piwi","evidences":[{"source":"PROSITE-ProRule","id":"PRU00150","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 148 |
| Details | Region: {"description":"Linker L1","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 60 |
| Details | Region: {"description":"PAZ domain","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 194 |
| Details | Region: {"description":"Linker L2","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 334 |
| Details | Region: {"description":"Mid domain","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 534 |
| Details | Region: {"description":"PIWI domain","evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"27325485","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29996105","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5AWH","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"6D8P","evidenceCode":"ECO:0000312"}]} |
| Chain | Residue | Details |
