Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6CUL

PvdF of pyoverdin biosynthesis is a structurally unique N10-formyltetrahydrofolate-dependent formyltransferase

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0002049	biological_process	pyoverdine biosynthetic process
A	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006164	biological_process	purine nucleotide biosynthetic process
A	0006189	biological_process	'de novo' IMP biosynthetic process
A	0009058	biological_process	biosynthetic process
A	0016740	molecular_function	transferase activity
A	0033608	molecular_function	formyl-CoA transferase activity
B	0002049	biological_process	pyoverdine biosynthetic process
B	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0006164	biological_process	purine nucleotide biosynthetic process
B	0006189	biological_process	'de novo' IMP biosynthetic process
B	0009058	biological_process	biosynthetic process
B	0016740	molecular_function	transferase activity
B	0033608	molecular_function	formyl-CoA transferase activity
C	0002049	biological_process	pyoverdine biosynthetic process
C	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0006164	biological_process	purine nucleotide biosynthetic process
C	0006189	biological_process	'de novo' IMP biosynthetic process
C	0009058	biological_process	biosynthetic process
C	0016740	molecular_function	transferase activity
C	0033608	molecular_function	formyl-CoA transferase activity
D	0002049	biological_process	pyoverdine biosynthetic process
D	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0006164	biological_process	purine nucleotide biosynthetic process
D	0006189	biological_process	'de novo' IMP biosynthetic process
D	0009058	biological_process	biosynthetic process
D	0016740	molecular_function	transferase activity
D	0033608	molecular_function	formyl-CoA transferase activity
E	0002049	biological_process	pyoverdine biosynthetic process
E	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0006164	biological_process	purine nucleotide biosynthetic process
E	0006189	biological_process	'de novo' IMP biosynthetic process
E	0009058	biological_process	biosynthetic process
E	0016740	molecular_function	transferase activity
E	0033608	molecular_function	formyl-CoA transferase activity
F	0002049	biological_process	pyoverdine biosynthetic process
F	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0006164	biological_process	purine nucleotide biosynthetic process
F	0006189	biological_process	'de novo' IMP biosynthetic process
F	0009058	biological_process	biosynthetic process
F	0016740	molecular_function	transferase activity
F	0033608	molecular_function	formyl-CoA transferase activity
G	0002049	biological_process	pyoverdine biosynthetic process
G	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0006164	biological_process	purine nucleotide biosynthetic process
G	0006189	biological_process	'de novo' IMP biosynthetic process
G	0009058	biological_process	biosynthetic process
G	0016740	molecular_function	transferase activity
G	0033608	molecular_function	formyl-CoA transferase activity
H	0002049	biological_process	pyoverdine biosynthetic process
H	0004644	molecular_function	phosphoribosylglycinamide formyltransferase activity
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0006164	biological_process	purine nucleotide biosynthetic process
H	0006189	biological_process	'de novo' IMP biosynthetic process
H	0009058	biological_process	biosynthetic process
H	0016740	molecular_function	transferase activity
H	0033608	molecular_function	formyl-CoA transferase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	binding site for residue FGD A 301

Chain	Residue
A	PRO67
B	TYR113
B	PRO114
A	ARG68
A	GLY71
A	LYS72
A	ASP75
A	HOH405
A	HOH409
B	THR109
B	ARG112

site_id	AC2
Number of Residues	6
Details	binding site for residue CIT A 302

Chain	Residue
A	ARG13
A	ARG68
A	LYS72
A	ARG111
A	LEU149
A	HOH411

site_id	AC3
Number of Residues	6
Details	binding site for residue CIT B 301

Chain	Residue
B	ARG13
B	ARG68
B	TYR110
B	ARG111
B	LEU149
B	VAL150

site_id	AC4
Number of Residues	8
Details	binding site for residue FGD C 301

Chain	Residue
C	ARG68
C	GLY71
C	LYS72
C	ASP75
D	THR109
D	ARG112
D	TYR113
D	PRO114

site_id	AC5
Number of Residues	7
Details	binding site for residue CIT C 302

Chain	Residue
C	ARG13
C	ARG68
C	LYS72
C	ARG111
C	LEU149
C	HOH412
D	GLU119

site_id	AC6
Number of Residues	9
Details	binding site for residue FGD D 301

Chain	Residue
A	THR109
A	ARG112
A	TYR113
A	PRO114
D	ARG68
D	GLY71
D	LYS72
D	ASP75
D	CIT302

site_id	AC7
Number of Residues	4
Details	binding site for residue CIT D 302

Chain	Residue
D	ARG13
D	ARG68
D	ARG111
D	FGD301

site_id	AC8
Number of Residues	10
Details	binding site for residue FGD E 301

Chain	Residue
E	ARG68
E	GLY71
E	LYS72
E	ASP75
E	CIT302
E	HOH403
H	THR109
H	ARG112
H	TYR113
H	PRO114

site_id	AC9
Number of Residues	6
Details	binding site for residue CIT E 302

Chain	Residue
E	ARG13
E	ARG68
E	ASP69
E	LYS72
E	ARG111
E	FGD301

site_id	AD1
Number of Residues	8
Details	binding site for residue FGD F 301

Chain	Residue
E	LEU66
E	THR109
E	ARG112
E	TYR113
F	ARG68
F	GLY71
F	LYS72
F	ASP75

site_id	AD2
Number of Residues	4
Details	binding site for residue CIT F 302

Chain	Residue
F	ARG13
F	ARG68
F	LYS72
F	ARG111

site_id	AD3
Number of Residues	7
Details	binding site for residue FGD G 301

Chain	Residue
F	THR109
F	ARG112
F	TYR113
G	ARG68
G	GLY71
G	LYS72
G	ASP75

site_id	AD4
Number of Residues	5
Details	binding site for residue CIT G 302

Chain	Residue
G	ARG13
G	ARG68
G	LYS72
G	ARG111
G	HOH428

site_id	AD5
Number of Residues	9
Details	binding site for residue FGD H 301

Chain	Residue
H	HOH420
G	THR109
G	ARG112
G	TYR113
H	PRO67
H	ARG68
H	GLY71
H	LYS72
H	ASP75

site_id	AD6
Number of Residues	5
Details	binding site for residue CIT H 302

Chain	Residue
G	HOH404
H	ARG13
H	ARG68
H	LYS72
H	ARG111

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)