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6CSS

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with cyclopentenylhydroxamate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
AFBJ804

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH943
AHOH960

site_idAC4
Number of Residues10
Detailsbinding site for residue FBJ A 804
ChainResidue
AHIS573
AHIS574
AGLY582
APHE583
AASP612
AHIS614
APHE643
AASP705
ATYR745
AZN801

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 805
ChainResidue
ALEU557
AARG736
AHOH906
BLEU557
BTHR558
BARG736
BEDO805

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 806
ChainResidue
ALYS506
BGLU515
BTHR540
BLEU543

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 807
ChainResidue
ALYS512
ASER513
AHIS516
AHOH932
AHOH939
AHOH1015

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO A 808
ChainResidue
AGLN554
ATHR558
AILE599
AHOH916
AHOH1092
AHOH1103

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 809
ChainResidue
APRO442
AILE443
AGLY559
AGLN560
AARG562
BARG601

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 810
ChainResidue
AGLN620
AHIS621
AGLU624
AASP648
AHOH907

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BFBJ804

site_idAD3
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAD4
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH957
BHOH1009

site_idAD5
Number of Residues10
Detailsbinding site for residue FBJ B 804
ChainResidue
BHIS573
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BTYR745
BZN801

site_idAD6
Number of Residues7
Detailsbinding site for residue EDO B 805
ChainResidue
ALEU557
ATHR558
AARG736
AEDO805
BLEU557
BTHR600
BARG736

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO B 806
ChainResidue
BGLN620
BHIS621
BGLU624
BASP648
BEDO807

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO B 807
ChainResidue
BVAL654
BGLY655
BLEU656
BEDO806
BGLU624
BASP652
BLYS653

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PDB entries from 2025-06-18

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