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6CSR

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with phenylhydroxamate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705
ABHO804

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH971
AHOH1084

site_idAC4
Number of Residues10
Detailsbinding site for residue BHO A 804
ChainResidue
AHIS573
AHIS574
APHE583
AASP612
AHIS614
APHE643
AASP705
ATYR745
AZN801
AHOH1107

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 805
ChainResidue
ALEU557
ATHR558
AARG736
AEDO806
BLEU557
BTHR600
BARG736

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 806
ChainResidue
ALEU557
AARG736
AEDO805
AHOH911
BLEU557
BARG736

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 807
ChainResidue
ALEU466
ALEU747
AHOH901
AHOH977
BHOH946
BHOH961

site_idAC8
Number of Residues6
Detailsbinding site for residue EDO A 808
ChainResidue
AALA500
ALEU501
ACYS502
AHIS503
ALYS577
AHOH934

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 809
ChainResidue
AARG451
AARG492
ALEU493
AHOH960
BSER509
BSER513
BMET517

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 810
ChainResidue
AMET453
ALEU454
AHIS456
AHOH1136

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO A 811
ChainResidue
AGLU515
ATYR539
ATHR540
BLYS506

site_idAD3
Number of Residues4
Detailsbinding site for residue EDO A 812
ChainResidue
AHOH909
AHOH912
AHOH975
AHOH1172

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705
BBHO804

site_idAD5
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAD6
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH948
BHOH1067

site_idAD7
Number of Residues11
Detailsbinding site for residue BHO B 804
ChainResidue
BHIS573
BHIS574
BGLY582
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BTYR745
BZN801
BHOH1080

site_idAD8
Number of Residues7
Detailsbinding site for residue EDO B 805
ChainResidue
BHOH901
BHOH937
BHOH985
AARG520
BPRO719
BGLU720
BGLU752

site_idAD9
Number of Residues1
Detailsbinding site for residue EDO B 806
ChainResidue
BHOH932

site_idAE1
Number of Residues6
Detailsbinding site for residue EDO B 807
ChainResidue
AARG788
BLEU493
BGLU515
BTYR539
BTHR540
BHOH1018

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PDB entries from 2024-11-06

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