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6CKW

Phosphopantetheine adenylyltransferase (CoaD) in complex with (R)-3-((7-(((S)-2-amino-2-(2-methoxyphenyl)ethyl)amino)-5-methyl-[1,2,4]triazolo[1,5-a]pyrimidin-2-yl)amino)-3-(3-chlorophenyl)propanenitrile

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004595molecular_functionpantetheine-phosphate adenylyltransferase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0009058biological_processbiosynthetic process
A0015937biological_processcoenzyme A biosynthetic process
A0016779molecular_functionnucleotidyltransferase activity
A0042802molecular_functionidentical protein binding
B0003824molecular_functioncatalytic activity
B0004595molecular_functionpantetheine-phosphate adenylyltransferase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0009058biological_processbiosynthetic process
B0015937biological_processcoenzyme A biosynthetic process
B0016779molecular_functionnucleotidyltransferase activity
B0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue F6D A 201
ChainResidue
APRO8
ATYR98
AGLN101
ALEU102
AMET105
AASN106
ASER130
ALEU131
AGLU134
AHIS138
ASO4202
AGLY9
ASO4204
AHOH309
AHOH350
AHOH370
AHOH371
AALA37
AALA38
ASER39
ASER71
AASP72
ALEU73
AMET74

site_idAC2
Number of Residues9
Detailsbinding site for residue SO4 A 202
ChainResidue
AGLY9
ATHR10
ALYS42
AARG88
AF6D201
AHOH304
AHOH316
AHOH342
AHOH375

site_idAC3
Number of Residues9
Detailsbinding site for residue SO4 A 203
ChainResidue
AHIS18
AARG91
ASER128
ASER129
ADMS205
AHOH304
AHOH306
AHOH312
AHOH342

site_idAC4
Number of Residues10
Detailsbinding site for residue SO4 A 204
ChainResidue
ASER39
APRO40
ASER41
AGLU134
AARG137
AHIS138
AF6D201
AHOH325
AHOH336
AHOH350

site_idAC5
Number of Residues4
Detailsbinding site for residue DMS A 205
ChainResidue
ATYR7
AGLY89
ASO4203
ADMS206

site_idAC6
Number of Residues6
Detailsbinding site for residue DMS A 206
ChainResidue
ATYR7
AHIS18
AARG91
APRO120
ADMS205
AHOH348

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 A 207
ChainResidue
ASER121
ALYS122
AHOH308
AHOH343
BHIS104
BARG107

site_idAC8
Number of Residues22
Detailsbinding site for residue F6D B 201
ChainResidue
BGLY9
BTHR10
BALA37
BALA38
BSER39
BPHE70
BSER71
BASP72
BLEU73
BMET74
BTYR98
BLEU102
BMET105
BASN106
BSER130
BLEU131
BGLU134
BHIS138
BSO4202
BSO4203
BHOH314
BHOH387

site_idAC9
Number of Residues7
Detailsbinding site for residue SO4 B 202
ChainResidue
BGLY9
BTHR10
BARG88
BF6D201
BDMS206
BHOH301
BHOH305

site_idAD1
Number of Residues7
Detailsbinding site for residue SO4 B 203
ChainResidue
BGLU134
BHIS138
BF6D201
BHOH306
BHOH345
BPRO40
BSER41

site_idAD2
Number of Residues7
Detailsbinding site for residue SO4 B 204
ChainResidue
BHIS18
BARG91
BSER128
BSER129
BHOH305
BHOH310
BHOH334

site_idAD3
Number of Residues6
Detailsbinding site for residue SO4 B 205
ChainResidue
AHIS104
AARG107
BSER121
BLYS122
BHOH302
BHOH308

site_idAD4
Number of Residues6
Detailsbinding site for residue DMS B 206
ChainResidue
BTYR7
BPRO8
BARG88
BGLY89
BSO4202
BDMS208

site_idAD5
Number of Residues7
Detailsbinding site for residue SO4 B 207
ChainResidue
BLYS42
BSER130
BLYS133
BGLU134
BARG137
BHOH343
BHOH357

site_idAD6
Number of Residues7
Detailsbinding site for residue DMS B 208
ChainResidue
BTYR7
BHIS18
BGLY89
BARG91
BPRO120
BDMS206
BHOH336

site_idAD7
Number of Residues5
Detailsbinding site for residue PG4 B 209
ChainResidue
BASN16
BASP20
BTHR23
BTRP124
BHOH338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:11812124, ECO:0007744|PDB:1GN8
ChainResidueDetails
ATYR7
BTRP124
AHIS18
AGLY89
AGLU99
ATRP124
BTYR7
BHIS18
BGLY89
BGLU99

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:11812124, ECO:0000269|PubMed:12837781, ECO:0007744|PDB:1H1T, ECO:0007744|PDB:1QJC
ChainResidueDetails
ATHR10
ALYS42
AMET74
BTHR10
BLYS42
BMET74

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11812124, ECO:0007744|PDB:1QJC
ChainResidueDetails
AARG88
BARG88

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000305|PubMed:11812124
ChainResidueDetails
AHIS18
BHIS18

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 299
ChainResidueDetails
AHIS18electrostatic stabiliser, hydrogen bond donor
ALYS42attractive charge-charge interaction, electrostatic stabiliser
AARG91attractive charge-charge interaction, electrostatic stabiliser
ASER129electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues4
DetailsM-CSA 299
ChainResidueDetails
BHIS18electrostatic stabiliser, hydrogen bond donor
BLYS42attractive charge-charge interaction, electrostatic stabiliser
BARG91attractive charge-charge interaction, electrostatic stabiliser
BSER129electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2024-07-10

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