Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6CIB

The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0046872molecular_functionmetal ion binding
D0000166molecular_functionnucleotide binding
D0046872molecular_functionmetal ion binding
E0000166molecular_functionnucleotide binding
E0046872molecular_functionmetal ion binding
F0000166molecular_functionnucleotide binding
F0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue ADP A 401
ChainResidue
AARG12
AALA150
AGLU156
AGLN160
AHOH513
AHOH521
AHOH547
AHOH549
AHOH552
AHOH553
AHOH625
ALYS64
AHOH633
AHOH641
AHOH654
AHOH656
AGLN70
AVAL73
ASER74
AMSE77
AGLU78
AGLU81
ASER149

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 402
ChainResidue
AGLU81
ALEU148
AGLU164
AHOH513
AHOH575
AHOH654

site_idAC3
Number of Residues3
Detailsbinding site for residue OXM A 403
ChainResidue
AARG41
AARG68
AHOH561

site_idAC4
Number of Residues21
Detailsbinding site for residue ADP B 401
ChainResidue
BARG12
BLYS64
BGLN70
BVAL73
BSER74
BMSE77
BGLU78
BGLU81
BSER149
BALA150
BGLU156
BGLN160
BHOH534
BHOH544
BHOH551
BHOH564
BHOH567
BHOH618
BHOH632
BHOH644
BHOH701

site_idAC5
Number of Residues6
Detailsbinding site for residue MG B 402
ChainResidue
BGLU81
BLEU148
BGLU164
BHOH534
BHOH544
BHOH587

site_idAC6
Number of Residues6
Detailsbinding site for residue OXM B 403
ChainResidue
BARG41
BARG68
BHOH530
EALA325
EGLY330
ELYS331

site_idAC7
Number of Residues20
Detailsbinding site for residue ADP C 401
ChainResidue
CARG12
CLYS64
CGLN70
CVAL73
CSER74
CMSE77
CGLU81
CSER149
CALA150
CGLN160
CHOH503
CHOH520
CHOH527
CHOH539
CHOH560
CHOH579
CHOH613
CHOH631
CHOH638
CHOH648

site_idAC8
Number of Residues5
Detailsbinding site for residue MG C 402
ChainResidue
CGLU81
CLEU148
CHOH551
CHOH579
CHOH648

site_idAC9
Number of Residues2
Detailsbinding site for residue OXM C 403
ChainResidue
CARG41
CARG68

site_idAD1
Number of Residues19
Detailsbinding site for residue ADP D 401
ChainResidue
DGLU81
DSER149
DALA150
DGLN160
DHOH501
DHOH507
DHOH524
DHOH545
DHOH557
DHOH611
DHOH612
DHOH615
DARG12
DLYS64
DGLN70
DVAL73
DSER74
DMSE77
DGLU78

site_idAD2
Number of Residues6
Detailsbinding site for residue MG D 402
ChainResidue
DGLU81
DLEU148
DGLU164
DHOH501
DHOH541
DHOH557

site_idAD3
Number of Residues6
Detailsbinding site for residue OXM D 403
ChainResidue
BALA325
BGLY330
BLYS331
DARG41
DARG68
DHOH580

site_idAD4
Number of Residues21
Detailsbinding site for residue ADP E 401
ChainResidue
EARG12
ELYS64
EGLN70
EVAL73
ESER74
EMSE77
EGLU78
EGLU81
ESER149
EALA150
EGLU156
EGLN160
EHOH511
EHOH531
EHOH537
EHOH545
EHOH569
EHOH571
EHOH587
EHOH655
EHOH709

site_idAD5
Number of Residues5
Detailsbinding site for residue MG E 402
ChainResidue
EGLU81
ELEU148
EHOH531
EHOH545
EHOH606

site_idAD6
Number of Residues6
Detailsbinding site for residue OXM E 403
ChainResidue
DALA325
DGLY330
DLYS331
EARG41
EARG68
EHOH581

site_idAD7
Number of Residues20
Detailsbinding site for residue ADP F 401
ChainResidue
FARG12
FLYS64
FGLN70
FVAL73
FSER74
FMSE77
FGLU78
FGLU81
FSER149
FALA150
FGLN160
FARG247
FHOH504
FHOH530
FHOH534
FHOH539
FHOH581
FHOH583
FHOH631
FHOH701

site_idAD8
Number of Residues6
Detailsbinding site for residue MG F 402
ChainResidue
FGLU81
FLEU148
FGLU164
FHOH504
FHOH530
FHOH573

site_idAD9
Number of Residues8
Detailsbinding site for residue OXM F 403
ChainResidue
CALA325
CGLY330
CLYS331
CHOH534
FARG41
FARG68
FHOH627
FHOH725

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon