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6CGN

X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit dAMP-bound (pH 7)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004748molecular_functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
A0005524molecular_functionATP binding
A0005971cellular_componentribonucleoside-diphosphate reductase complex
A0009263biological_processdeoxyribonucleotide biosynthetic process
A0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue D5M A 801
ChainResidue
AVAL33
AASP215
APO4802
AHOH919
AHIS34
APHE37
AASN42
AARG90
APHE91
AARG117
AILE213
ALYS214

site_idAC2
Number of Residues10
Detailsbinding site for residue PO4 A 802
ChainResidue
ALYS88
AARG90
AILE213
ALYS214
AASP215
AGLU399
AGLU400
AASP401
AD5M801
AHOH951

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 803
ChainResidue
AGLY476
AALA478
ASER481
AGLU483
ALYS542

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 804
ChainResidue
AARG350
ALEU656
ALEU667
AASP671

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 805
ChainResidue
AGLU65
AGLU66
AGLU67
ALYS162

Functional Information from PROSITE/UniProt
site_idPS00089
Number of Residues23
DetailsRIBORED_LARGE Ribonucleotide reductase large subunit signature. WkkLkafvaehGMYHsyrLCiaP
ChainResidueDetails
ATRP558-PRO580

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000250
ChainResidueDetails
AASN380
AGLU384

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Cysteine radical intermediate => ECO:0000250
ChainResidueDetails
ACYS382

site_idSWS_FT_FI3
Number of Residues5
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ASER169
AGLY198
AASN380
APRO580
ATHR153

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for hydrogen atom transfer => ECO:0000250
ChainResidueDetails
ACYS409
ACYS170

site_idSWS_FT_FI5
Number of Residues2
DetailsSITE: Allosteric effector binding => ECO:0000250
ChainResidueDetails
AASP177
AARG207

site_idSWS_FT_FI6
Number of Residues2
DetailsSITE: Important for electron transfer => ECO:0000250
ChainResidueDetails
ATYR683
ATYR684

site_idSWS_FT_FI7
Number of Residues2
DetailsSITE: Interacts with thioredoxin/glutaredoxin => ECO:0000250
ChainResidueDetails
ACYS695
ACYS698

221051

PDB entries from 2024-06-12

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