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6CC9

NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0006869biological_processlipid transport
A0008289molecular_functionlipid binding
A0042157biological_processlipoprotein metabolic process
B0000139cellular_componentGolgi membrane
B0000165biological_processMAPK cascade
B0000166molecular_functionnucleotide binding
B0001889biological_processliver development
B0003924molecular_functionGTPase activity
B0003925molecular_functionG protein activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005741cellular_componentmitochondrial outer membrane
B0005789cellular_componentendoplasmic reticulum membrane
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0007165biological_processsignal transduction
B0007265biological_processRas protein signal transduction
B0007565biological_processfemale pregnancy
B0008284biological_processpositive regulation of cell population proliferation
B0009629biological_processresponse to gravity
B0009898cellular_componentcytoplasmic side of plasma membrane
B0010628biological_processpositive regulation of gene expression
B0012505cellular_componentendomembrane system
B0016020cellular_componentmembrane
B0016787molecular_functionhydrolase activity
B0019002molecular_functionGMP binding
B0019003molecular_functionGDP binding
B0019221biological_processcytokine-mediated signaling pathway
B0030275molecular_functionLRR domain binding
B0035900biological_processresponse to isolation stress
B0043495molecular_functionprotein-membrane adaptor activity
B0044877molecular_functionprotein-containing complex binding
B0046579biological_processpositive regulation of Ras protein signal transduction
B0051384biological_processresponse to glucocorticoid
B0051385biological_processresponse to mineralocorticoid
B0051450biological_processmyoblast proliferation
B0060038biological_processcardiac muscle cell proliferation
B2000774biological_processpositive regulation of cellular senescence
C0005576cellular_componentextracellular region
C0006869biological_processlipid transport
C0008289molecular_functionlipid binding
C0042157biological_processlipoprotein metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue PCW A 401
ChainResidue
ATYR349
AALA353
BCYS185
BPCW213
B17F228
CPCW614

site_idAC2
Number of Residues2
Detailsbinding site for residue PCW A 402
ChainResidue
BPCW205
BPCW212

site_idAC3
Number of Residues6
Detailsbinding site for residue PCW A 403
ChainResidue
BGLU3
BLYS5
BPCW212
BPCW218
CPCW606
APHE214

site_idAC4
Number of Residues5
Detailsbinding site for residue PCW A 404
ChainResidue
BARG73
BVAL103
BPCW225
CPCW626
C17F631

site_idAC5
Number of Residues5
Detailsbinding site for residue PCW A 405
ChainResidue
BPCW207
BPCW209
B17F228
CPCW609
CPCW614

site_idAC6
Number of Residues5
Detailsbinding site for residue PCW A 406
ChainResidue
ALEU397
A17F407
BLYS184
B17F227
B17F230

site_idAC7
Number of Residues4
Detailsbinding site for residue 17F A 407
ChainResidue
APCW406
BPCW201
BPCW205
B17F227

site_idAC8
Number of Residues4
Detailsbinding site for residue PCW A 408
ChainResidue
APCW410
APCW411
BPCW205
CPCW610

site_idAC9
Number of Residues4
Detailsbinding site for residue PCW A 409
ChainResidue
B17F227
CPCW613
CPCW619
C17F630

site_idAD1
Number of Residues3
Detailsbinding site for residue PCW A 410
ChainResidue
APCW408
APCW411
C17F630

site_idAD2
Number of Residues3
Detailsbinding site for residue PCW A 411
ChainResidue
APCW408
APCW410
CPCW616

site_idAD3
Number of Residues9
Detailsbinding site for residue PCW B 201
ChainResidue
A17F407
BLYS182
BTHR183
BLYS184
B17F227
B17F228
B17F230
B17F232
CPCW623

site_idAD4
Number of Residues4
Detailsbinding site for residue PCW B 202
ChainResidue
BPCW210
BPCW214
BPCW215
BPCW217

site_idAD5
Number of Residues5
Detailsbinding site for residue PCW B 203
ChainResidue
BLYS184
BPCW213
B17F228
B17F230
B17F232

site_idAD6
Number of Residues8
Detailsbinding site for residue PCW B 204
ChainResidue
BLYS175
BPCW205
BPCW208
BPCW212
BPCW218
BPCW222
B17F231
C17F631

site_idAD7
Number of Residues6
Detailsbinding site for residue PCW B 205
ChainResidue
APCW402
A17F407
APCW408
BPCW204
B17F227
CPCW610

site_idAD8
Number of Residues10
Detailsbinding site for residue PCW B 206
ChainResidue
BLYS175
BPCW208
BPCW211
BPCW218
BPCW220
BPCW222
BPCW224
B17F226
B17F232
BPCW235

site_idAD9
Number of Residues7
Detailsbinding site for residue PCW B 207
ChainResidue
APCW405
BLYS179
BPCW209
BPCW216
B17F228
B17F229
CPCW601

site_idAE1
Number of Residues11
Detailsbinding site for residue PCW B 208
ChainResidue
BPCW211
BPCW218
BPCW219
BPCW222
B17F231
BPCW234
B17F236
CPCW617
BLYS175
BPCW204
BPCW206

site_idAE2
Number of Residues9
Detailsbinding site for residue PCW B 209
ChainResidue
APCW405
BLYS178
BLYS179
BPCW207
BPCW216
BPCW224
B17F228
B17F232
CPCW609

site_idAE3
Number of Residues7
Detailsbinding site for residue PCW B 210
ChainResidue
BLYS177
BPCW202
BPCW214
BPCW217
BPCW221
B17F226
B17F229

site_idAE4
Number of Residues10
Detailsbinding site for residue PCW B 211
ChainResidue
BLYS176
BPCW206
BPCW208
BPCW215
BPCW217
BPCW224
B17F226
B17F229
B17F236
CPCW607

site_idAE5
Number of Residues4
Detailsbinding site for residue PCW B 212
ChainResidue
APCW402
APCW403
BPCW204
B17F231

site_idAE6
Number of Residues7
Detailsbinding site for residue PCW B 213
ChainResidue
APCW401
BLYS184
BCYS185
BPCW203
B17F228
B17F230
B17F232

site_idAE7
Number of Residues7
Detailsbinding site for residue PCW B 214
ChainResidue
BPCW202
BPCW210
BPCW217
B17F229
CPCW607
CPCW615
C17F633

site_idAE8
Number of Residues8
Detailsbinding site for residue PCW B 215
ChainResidue
BLYS176
BPCW202
BPCW211
BPCW217
BPCW219
BPCW223
CPCW608
C17F632

site_idAE9
Number of Residues6
Detailsbinding site for residue PCW B 216
ChainResidue
BLYS177
BPCW207
BPCW209
BPCW224
B17F229
CPCW605

site_idAF1
Number of Residues8
Detailsbinding site for residue PCW B 217
ChainResidue
BLYS176
BPCW202
BPCW210
BPCW211
BPCW214
BPCW215
B17F226
CPCW615

site_idAF2
Number of Residues7
Detailsbinding site for residue PCW B 218
ChainResidue
APCW403
BPCW204
BPCW206
BPCW208
BPCW219
BPCW225
B17F231

site_idAF3
Number of Residues9
Detailsbinding site for residue PCW B 219
ChainResidue
BPCW208
BPCW215
BPCW218
BPCW223
BPCW225
CPCW621
CPCW622
CPCW626
C17F631

site_idAF4
Number of Residues5
Detailsbinding site for residue PCW B 220
ChainResidue
BLYS175
BPCW206
BPCW222
B17F232
BPCW235

site_idAF5
Number of Residues5
Detailsbinding site for residue PCW B 221
ChainResidue
BLYS177
BPCW210
B17F229
CPCW601
C17F627

site_idAF6
Number of Residues7
Detailsbinding site for residue PCW B 222
ChainResidue
BPCW204
BPCW206
BPCW208
BPCW220
BPCW234
BPCW235
CPCW622

site_idAF7
Number of Residues3
Detailsbinding site for residue PCW B 223
ChainResidue
BPCW215
BPCW219
CPCW622

site_idAF8
Number of Residues10
Detailsbinding site for residue PCW B 224
ChainResidue
BLYS177
BLYS178
BPCW206
BPCW209
BPCW211
BPCW216
B17F226
B17F229
B17F232
CPCW604

site_idAF9
Number of Residues6
Detailsbinding site for residue PCW B 225
ChainResidue
APCW404
BASP105
BPCW218
BPCW219
CPCW608
CPCW626

site_idAG1
Number of Residues13
Detailsbinding site for residue 17F B 226
ChainResidue
BLYS176
BLYS177
BPCW206
BPCW210
BPCW211
BPCW217
BPCW224
B17F232
CPCW603
CPCW607
CPCW621
CPCW622
C17F628

site_idAG2
Number of Residues9
Detailsbinding site for residue 17F B 227
ChainResidue
APCW406
A17F407
APCW409
BLYS184
BPCW201
BPCW205
B17F230
CPCW613
CPCW619

site_idAG3
Number of Residues9
Detailsbinding site for residue 17F B 228
ChainResidue
APCW401
APCW405
BLYS179
BPCW201
BPCW203
BPCW207
BPCW209
BPCW213
CPCW611

site_idAG4
Number of Residues9
Detailsbinding site for residue 17F B 229
ChainResidue
BLYS177
BPCW207
BPCW210
BPCW211
BPCW214
BPCW216
BPCW221
BPCW224
CPCW615

site_idAG5
Number of Residues7
Detailsbinding site for residue 17F B 230
ChainResidue
APCW406
BLYS184
BPCW201
BPCW203
BPCW213
B17F227
CPCW619

site_idAG6
Number of Residues6
Detailsbinding site for residue 17F B 231
ChainResidue
BLYS104
BPCW204
BPCW208
BPCW212
BPCW218
CPCW618

site_idAG7
Number of Residues12
Detailsbinding site for residue 17F B 232
ChainResidue
BLYS178
BSER181
BLYS182
BPCW201
BPCW203
BPCW206
BPCW209
BPCW213
BPCW220
BPCW224
B17F226
BPCW233

site_idAG8
Number of Residues6
Detailsbinding site for residue PCW B 233
ChainResidue
B17F232
B17F236
CPCW602
CPCW603
CPCW623
CPCW625

site_idAG9
Number of Residues4
Detailsbinding site for residue PCW B 234
ChainResidue
BPCW208
BPCW222
CPCW602
CPCW617

site_idAH1
Number of Residues6
Detailsbinding site for residue PCW B 235
ChainResidue
BPCW206
BPCW220
BPCW222
CPCW602
CPCW622
CPCW623

site_idAH2
Number of Residues7
Detailsbinding site for residue 17F B 236
ChainResidue
BPCW208
BPCW211
BPCW233
CPCW602
CPCW603
CPCW622
C17F628

site_idAH3
Number of Residues20
Detailsbinding site for residue GNP B 237
ChainResidue
BVAL12
BGLY13
BVAL14
BGLY15
BLYS16
BSER17
BPHE28
BVAL29
BASP30
BGLU31
BTYR32
BASP33
BPRO34
BASN116
BLYS117
BASP119
BLEU120
BSER145
BALA146
BLYS147

site_idAH4
Number of Residues3
Detailsbinding site for residue MG B 238
ChainResidue
BTHR35
BTYR40
BASP57

site_idAH5
Number of Residues10
Detailsbinding site for residue EWS B 239
ChainResidue
BLYS5
BLEU6
BVAL7
BVAL8
BASP54
BILE55
BLEU56
BTYR71
BMET72
BTHR74

site_idAH6
Number of Residues3
Detailsbinding site for residue PCW C 601
ChainResidue
BPCW207
BPCW221
C17F627

site_idAH7
Number of Residues4
Detailsbinding site for residue PCW C 602
ChainResidue
BPCW233
BPCW234
BPCW235
B17F236

site_idAH8
Number of Residues7
Detailsbinding site for residue PCW C 603
ChainResidue
B17F226
BPCW233
B17F236
CPCW605
CPCW607
C17F628
C17F632

site_idAH9
Number of Residues3
Detailsbinding site for residue PCW C 604
ChainResidue
BPCW224
CPCW625
C17F627

site_idAI1
Number of Residues5
Detailsbinding site for residue PCW C 605
ChainResidue
BPCW216
CPCW603
CPCW607
CPCW615
C17F629

site_idAI2
Number of Residues2
Detailsbinding site for residue PCW C 606
ChainResidue
APCW403
CPCW612

site_idAI3
Number of Residues8
Detailsbinding site for residue PCW C 607
ChainResidue
BPCW211
BPCW214
B17F226
CPCW603
CPCW605
CPCW615
C17F632
C17F633

site_idAI4
Number of Residues3
Detailsbinding site for residue PCW C 608
ChainResidue
BPCW215
BPCW225
C17F631

site_idAI5
Number of Residues5
Detailsbinding site for residue PCW C 609
ChainResidue
APCW405
BPCW209
CPCW614
CPCW624
CPCW625

site_idAI6
Number of Residues4
Detailsbinding site for residue PCW C 610
ChainResidue
APCW408
BPCW205
CPCW616
CPCW617

site_idAI7
Number of Residues4
Detailsbinding site for residue PCW C 611
ChainResidue
B17F228
CPCW613
CPCW619
CPCW623

site_idAI8
Number of Residues2
Detailsbinding site for residue PCW C 612
ChainResidue
CPCW606
CPCW626

site_idAI9
Number of Residues4
Detailsbinding site for residue PCW C 613
ChainResidue
APCW409
B17F227
CPCW611
CPCW619

site_idAJ1
Number of Residues3
Detailsbinding site for residue PCW C 614
ChainResidue
APCW401
APCW405
CPCW609

site_idAJ2
Number of Residues9
Detailsbinding site for residue PCW C 615
ChainResidue
BPCW214
BPCW217
B17F229
CPCW605
CPCW607
C17F627
C17F629
C17F632
C17F633

site_idAJ3
Number of Residues3
Detailsbinding site for residue PCW C 616
ChainResidue
APCW411
CPCW610
CPCW617

site_idAJ4
Number of Residues5
Detailsbinding site for residue PCW C 617
ChainResidue
BPCW208
BPCW234
CPCW610
CPCW616
CPCW626

site_idAJ5
Number of Residues3
Detailsbinding site for residue PCW C 618
ChainResidue
B17F231
CPCW622
CPCW626

site_idAJ6
Number of Residues5
Detailsbinding site for residue PCW C 619
ChainResidue
APCW409
B17F227
B17F230
CPCW611
CPCW613

site_idAJ7
Number of Residues2
Detailsbinding site for residue PCW C 620
ChainResidue
CALA485
C17F633

site_idAJ8
Number of Residues4
Detailsbinding site for residue PCW C 621
ChainResidue
BPCW219
B17F226
CPCW622
C17F632

site_idAJ9
Number of Residues8
Detailsbinding site for residue PCW C 622
ChainResidue
BPCW219
BPCW222
BPCW223
B17F226
BPCW235
B17F236
CPCW618
CPCW621

site_idAK1
Number of Residues4
Detailsbinding site for residue PCW C 623
ChainResidue
BPCW201
BPCW233
BPCW235
CPCW611

site_idAK2
Number of Residues2
Detailsbinding site for residue PCW C 624
ChainResidue
CPCW609
CPCW625

site_idAK3
Number of Residues4
Detailsbinding site for residue PCW C 625
ChainResidue
BPCW233
CPCW604
CPCW609
CPCW624

site_idAK4
Number of Residues7
Detailsbinding site for residue PCW C 626
ChainResidue
APCW404
BPCW219
BPCW225
CPCW612
CPCW617
CPCW618
C17F631

site_idAK5
Number of Residues5
Detailsbinding site for residue 17F C 627
ChainResidue
BPCW221
CPCW601
CPCW604
CPCW615
C17F629

site_idAK6
Number of Residues4
Detailsbinding site for residue 17F C 628
ChainResidue
B17F226
B17F236
CPCW603
C17F632

site_idAK7
Number of Residues5
Detailsbinding site for residue 17F C 629
ChainResidue
CVAL474
CPCW605
CPCW615
C17F627
C17F633

site_idAK8
Number of Residues3
Detailsbinding site for residue 17F C 630
ChainResidue
APCW409
APCW410
CLEU595

site_idAK9
Number of Residues5
Detailsbinding site for residue 17F C 631
ChainResidue
APCW404
BPCW204
BPCW219
CPCW608
CPCW626

site_idAL1
Number of Residues6
Detailsbinding site for residue 17F C 632
ChainResidue
BPCW215
CPCW603
CPCW607
CPCW615
CPCW621
C17F628

site_idAL2
Number of Residues5
Detailsbinding site for residue 17F C 633
ChainResidue
BPCW214
CPCW607
CPCW615
CPCW620
C17F629

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsRepeat: {"description":"1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues42
DetailsRepeat: {"description":"2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues20
DetailsRepeat: {"description":"3; half-length"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues42
DetailsRepeat: {"description":"4"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues42
DetailsRepeat: {"description":"5"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues42
DetailsRepeat: {"description":"6"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues42
DetailsRepeat: {"description":"7"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues42
DetailsRepeat: {"description":"8"}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues20
DetailsRepeat: {"description":"9; half-length"}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues4
DetailsModified residue: {"description":"Methionine sulfoxide","evidences":[{"source":"PubMed","id":"12576517","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (Glc) (glycation) lysine","evidences":[{"source":"PubMed","id":"8261628","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues8
DetailsMotif: {"description":"Effector region"}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22431598","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22566140","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34380736","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"35522713","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues1
DetailsModified residue: {"description":"N-acetylmethionine; in GTPase KRas; alternate","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Calvo F.","Kolch W."]}}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues1
DetailsModified residue: {"description":"N-acetylthreonine; in GTPase KRas, N-terminally processed","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2008","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V.","Calvo F.","Kolch W."]}}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"22711838","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues1
DetailsModified residue: {"description":"Cysteine methyl ester","evidences":[{"source":"PubMed","id":"27791178","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5TAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TB5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues1
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues1
DetailsLipidation: {"description":"N6-palmitoyl lysine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues2
DetailsLipidation: {"description":"N6-palmitoyl lysine","evidences":[{"source":"PubMed","id":"29239724","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues1
DetailsLipidation: {"description":"S-farnesyl cysteine","evidences":[{"source":"PubMed","id":"27791178","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24415755","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5TAR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5TB5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues1
DetailsGlycosylation: {"description":"(Microbial infection) O-linked (Glc) threonine; by P.sordellii toxin TcsL","evidences":[{"source":"PubMed","id":"19744486","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"30442762","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

249697

PDB entries from 2026-02-25

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