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6CB3

Crystal structure of the L.Lactis YkoY riboswitch bound to cadmium

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CD A 201
ChainResidue
AG51
ACD217
AHOH317
AHOH358
AHOH371
BHOH389

site_idAC2
Number of Residues8
Detailsbinding site for residue CD A 202
ChainResidue
AU39
AU44
AHOH343
AHOH359
AHOH374
AG8
AG9
AA10

site_idAC3
Number of Residues5
Detailsbinding site for residue CD A 203
ChainResidue
AG77
AA78
BA22
BA52
BHOH323

site_idAC4
Number of Residues7
Detailsbinding site for residue CD A 204
ChainResidue
AA42
AU43
AHOH382
AHOH403
BU43
BHOH326
BHOH363

site_idAC5
Number of Residues4
Detailsbinding site for residue CD A 205
ChainResidue
AA29
AHOH383
AHOH424
AHOH433

site_idAC6
Number of Residues5
Detailsbinding site for residue CD A 206
ChainResidue
AG9
AU39
AC40
AA41
AU44

site_idAC7
Number of Residues7
Detailsbinding site for residue CD A 207
ChainResidue
AA41
AU43
AU44
AHOH347
AHOH349
AHOH360
AHOH443

site_idAC8
Number of Residues6
Detailsbinding site for residue CD A 208
ChainResidue
AA3
AGTP219
AHOH324
AHOH357
AHOH419
AHOH422

site_idAC9
Number of Residues4
Detailsbinding site for residue CD A 209
ChainResidue
AA53
AHOH320
BGTP221
BHOH361

site_idAD1
Number of Residues7
Detailsbinding site for residue CD A 210
ChainResidue
AG21
AHOH311
AHOH341
AHOH397
AHOH421
AHOH446
AHOH461

site_idAD2
Number of Residues5
Detailsbinding site for residue CD A 211
ChainResidue
AG20
AG21
AHOH311
AHOH341
AHOH455

site_idAD3
Number of Residues1
Detailsbinding site for residue CD A 212
ChainResidue
AHOH378

site_idAD4
Number of Residues4
Detailsbinding site for residue CD A 213
ChainResidue
AG11
AMG230
AHOH319
AHOH423

site_idAD5
Number of Residues3
Detailsbinding site for residue CD A 214
ChainResidue
AG81
AHOH385
AHOH462

site_idAD6
Number of Residues1
Detailsbinding site for residue CD A 215
ChainResidue
AA32

site_idAD7
Number of Residues2
Detailsbinding site for residue CD A 216
ChainResidue
AG48
AHOH308

site_idAD8
Number of Residues4
Detailsbinding site for residue CD A 217
ChainResidue
AG51
ACD201
AHOH358
AHOH371

site_idAD9
Number of Residues5
Detailsbinding site for residue CD A 218
ChainResidue
AG8
AG94
ABA222
AHOH344
AHOH395

site_idAE1
Number of Residues12
Detailsbinding site for residue GTP A 219
ChainResidue
AA3
ACD208
AHOH314
AHOH316
AHOH324
AHOH357
AHOH368
BA22
BA52
BA53
BCD206
BCD210

site_idAE2
Number of Residues3
Detailsbinding site for residue BA A 220
ChainResidue
AU69
AG70
AU87

site_idAE3
Number of Residues3
Detailsbinding site for residue BA A 221
ChainResidue
AC40
AHOH400
AHOH467

site_idAE4
Number of Residues3
Detailsbinding site for residue BA A 222
ChainResidue
AG8
ACD218
AHOH399

site_idAE5
Number of Residues3
Detailsbinding site for residue BA A 223
ChainResidue
AG77
AHOH425
BA54

site_idAE6
Number of Residues5
Detailsbinding site for residue BA A 224
ChainResidue
AG46
AHOH346
AHOH418
AHOH430
AHOH465

site_idAE7
Number of Residues2
Detailsbinding site for residue BA A 225
ChainResidue
AU84
AG85

site_idAE8
Number of Residues7
Detailsbinding site for residue BA A 226
ChainResidue
AG35
AU36
AG61
AG62
AHOH408
AHOH415
AHOH416

site_idAE9
Number of Residues4
Detailsbinding site for residue MG A 227
ChainResidue
AU43
AC45
BC97
BU98

site_idAF1
Number of Residues4
Detailsbinding site for residue MG A 228
ChainResidue
AU36
AC37
AG62
AHOH302

site_idAF2
Number of Residues3
Detailsbinding site for residue MG A 229
ChainResidue
AU12
AA13
AHOH350

site_idAF3
Number of Residues3
Detailsbinding site for residue MG A 230
ChainResidue
AG11
AA92
ACD213

site_idAF4
Number of Residues6
Detailsbinding site for residue CD B 201
ChainResidue
BG21
BHOH321
BHOH333
BHOH377
BHOH411
BHOH463

site_idAF5
Number of Residues4
Detailsbinding site for residue CD B 202
ChainResidue
BG20
BG21
BHOH333
BHOH419

site_idAF6
Number of Residues6
Detailsbinding site for residue CD B 203
ChainResidue
AA22
AA52
AHOH306
AHOH356
BG77
BA78

site_idAF7
Number of Residues4
Detailsbinding site for residue CD B 204
ChainResidue
BA29
BHOH353
BHOH406
BHOH424

site_idAF8
Number of Residues6
Detailsbinding site for residue CD B 205
ChainResidue
BG8
BG9
BA10
BU39
BC45
BHOH318

site_idAF9
Number of Residues5
Detailsbinding site for residue CD B 206
ChainResidue
AGTP219
AHOH314
AHOH316
AHOH357
BA53

site_idAG1
Number of Residues6
Detailsbinding site for residue CD B 207
ChainResidue
BG9
BU39
BC40
BA41
BU44
BC45

site_idAG2
Number of Residues5
Detailsbinding site for residue CD B 208
ChainResidue
BG46
BHOH347
BHOH421
BHOH422
BHOH469

site_idAG3
Number of Residues7
Detailsbinding site for residue CD B 209
ChainResidue
BU84
BG85
BHOH374
BHOH385
BHOH426
BHOH433
BHOH464

site_idAG4
Number of Residues6
Detailsbinding site for residue CD B 210
ChainResidue
AGTP219
AHOH368
BG51
BHOH335
BHOH369
BHOH397

site_idAG5
Number of Residues4
Detailsbinding site for residue CD B 211
ChainResidue
BA3
BGTP221
BHOH361
BHOH403

site_idAG6
Number of Residues2
Detailsbinding site for residue CD B 212
ChainResidue
BU12
BA13

site_idAG7
Number of Residues2
Detailsbinding site for residue CD B 213
ChainResidue
BHOH385
BHOH426

site_idAG8
Number of Residues4
Detailsbinding site for residue CD B 214
ChainResidue
BG81
BHOH396
BHOH440
BHOH472

site_idAG9
Number of Residues1
Detailsbinding site for residue CD B 215
ChainResidue
BG27

site_idAH1
Number of Residues3
Detailsbinding site for residue CD B 216
ChainResidue
BG11
BHOH306
BHOH359

site_idAH2
Number of Residues2
Detailsbinding site for residue CD B 217
ChainResidue
BG6
BHOH358

site_idAH3
Number of Residues2
Detailsbinding site for residue CD B 218
ChainResidue
BC45
BHOH400

site_idAH4
Number of Residues4
Detailsbinding site for residue CD B 219
ChainResidue
BG77
BA79
BHOH439
BHOH449

site_idAH5
Number of Residues1
Detailsbinding site for residue CD B 220
ChainResidue
BG77

site_idAH6
Number of Residues10
Detailsbinding site for residue GTP B 221
ChainResidue
AA22
AA52
ACD209
AHOH320
AHOH371
BA3
BC101
BCD211
BHOH361
BHOH389

site_idAH7
Number of Residues6
Detailsbinding site for residue BA B 222
ChainResidue
BG8
BHOH311
BHOH352
BHOH392
BHOH438
BHOH448

site_idAH8
Number of Residues5
Detailsbinding site for residue BA B 223
ChainResidue
BG11
BU12
BA13
BHOH362
BHOH379

site_idAH9
Number of Residues3
Detailsbinding site for residue BA B 224
ChainResidue
BU69
BG70
BU87

site_idAI1
Number of Residues3
Detailsbinding site for residue BA B 225
ChainResidue
AA54
BG77
BHOH368

site_idAI2
Number of Residues5
Detailsbinding site for residue BA B 226
ChainResidue
BU39
BC40
BHOH372
BHOH375
BHOH412

site_idAI3
Number of Residues8
Detailsbinding site for residue BA B 227
ChainResidue
BG35
BU36
BG61
BG62
BHOH380
BHOH386
BHOH415
BHOH416

site_idAI4
Number of Residues1
Detailsbinding site for residue MG B 228
ChainResidue
BHOH432

site_idAI5
Number of Residues3
Detailsbinding site for residue MG B 229
ChainResidue
BC91
BA92
BHOH324

225158

PDB entries from 2024-09-18

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