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6BYP

Structure of PL24 family Polysaccharide lyase-LOR107

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0005886cellular_componentplasma membrane
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
B0005576cellular_componentextracellular region
B0005886cellular_componentplasma membrane
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 601
ChainResidue
AASP212
AASP222
ALYS224
AHOH743
AHOH782
AHOH888

site_idAC2
Number of Residues7
Detailsbinding site for residue CA A 602
ChainResidue
AHOH791
AHOH809
AHOH837
AHOH893
AASN323
AASP326
APHE328

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 603
ChainResidue
AHIS377
ATHR378
AALA379
ASER382
AARG412
AHOH936

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 604
ChainResidue
AASP326
AARG327
AHOH830

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 605
ChainResidue
AHIS384
ATHR387
AARG406

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 606
ChainResidue
AARG132
AHOH711
AHOH925
BLYS416

site_idAC7
Number of Residues7
Detailsbinding site for residue SO4 A 607
ChainResidue
APRO130
AHIS131
AASP221
ALYS224
AHOH718
AHOH836
AHOH846

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 A 608
ChainResidue
AARG137
AHIS167
AARG177
AHOH856

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 A 609
ChainResidue
AHIS146
ATYR243
AARG259

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 A 610
ChainResidue
AASN83
AHIS87
AHOH720
AHOH741

site_idAD2
Number of Residues9
Detailsbinding site for residue GOL A 611
ChainResidue
APHE191
AHIS225
ATHR227
AMET228
AGLY230
ALYS279
AHOH838
AHOH875
AHOH909

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL A 612
ChainResidue
AASN263
AASN264
AASN324
AHOH808
AHOH852

site_idAD4
Number of Residues5
Detailsbinding site for residue GOL A 613
ChainResidue
AASN111
AGLN128
APHE129
APRO130
BGOL609

site_idAD5
Number of Residues7
Detailsbinding site for residue CA B 601
ChainResidue
BASN323
BASP326
BPHE328
BHOH731
BHOH760
BHOH828
BHOH839

site_idAD6
Number of Residues6
Detailsbinding site for residue CA B 602
ChainResidue
BASP212
BASP222
BLYS224
BHOH772
BHOH812
BHOH941

site_idAD7
Number of Residues6
Detailsbinding site for residue SO4 B 603
ChainResidue
BHIS377
BTHR378
BALA379
BSER382
BARG412
BHOH743

site_idAD8
Number of Residues6
Detailsbinding site for residue SO4 B 604
ChainResidue
BASP326
BARG327
BHOH723
BHOH758
BHOH815
BHOH901

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 B 605
ChainResidue
BPHE80
BARG137
BARG177
BHOH884

site_idAE1
Number of Residues3
Detailsbinding site for residue SO4 B 606
ChainResidue
BTYR243
BARG259
BTYR303

site_idAE2
Number of Residues4
Detailsbinding site for residue SO4 B 607
ChainResidue
BTHR387
BARG406
BHOH739
BHIS384

site_idAE3
Number of Residues4
Detailsbinding site for residue SO4 B 608
ChainResidue
BASN83
BHIS87
BGLY487
BHOH921

site_idAE4
Number of Residues7
Detailsbinding site for residue GOL B 609
ChainResidue
APRO130
AGOL613
AHOH707
BTYR374
BTHR434
BTHR435
BHOH860

site_idAE5
Number of Residues5
Detailsbinding site for residue GOL B 610
ChainResidue
ATHR357
BVAL361
BASN362
BHOH799
BHOH804

site_idAE6
Number of Residues2
Detailsbinding site for residue PEG B 611
ChainResidue
BALA479
BSER480

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor/acceptor => ECO:0000305|PubMed:29382716
ChainResidueDetails
AHIS146
BHIS146

site_idSWS_FT_FI2
Number of Residues20
DetailsBINDING: BINDING => ECO:0000269|PubMed:29382716
ChainResidueDetails
ASER145
AHIS384
BSER145
BASP212
BASP222
BLYS224
BTYR303
BARG320
BASN323
BASP326
BPHE328
AASP212
BHIS384
AASP222
ALYS224
ATYR303
AARG320
AASN323
AASP326
APHE328

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Neutralizes the sugar carboxylate group at subsite +1 => ECO:0000305|PubMed:29382716
ChainResidueDetails
AARG259
BARG259

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PDB entries from 2024-07-10

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