Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6BTW

Crystal Structure of the Human vaccinia-related kinase bound to a phenyl-pteridinone inhibitor

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000785	cellular_component	chromatin
A	0004672	molecular_function	protein kinase activity
A	0004674	molecular_function	protein serine/threonine kinase activity
A	0005515	molecular_function	protein binding
A	0005524	molecular_function	ATP binding
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005730	cellular_component	nucleolus
A	0005737	cellular_component	cytoplasm
A	0005795	cellular_component	Golgi stack
A	0005829	cellular_component	cytosol
A	0006338	biological_process	chromatin remodeling
A	0006468	biological_process	protein phosphorylation
A	0006974	biological_process	DNA damage response
A	0007077	biological_process	mitotic nuclear membrane disassembly
A	0007165	biological_process	signal transduction
A	0015030	cellular_component	Cajal body
A	0016301	molecular_function	kinase activity
A	0016740	molecular_function	transferase activity
A	0019901	molecular_function	protein kinase binding
A	0030576	biological_process	Cajal body organization
A	0031175	biological_process	neuron projection development
A	0031492	molecular_function	nucleosomal DNA binding
A	0035175	molecular_function	histone H3S10 kinase activity
A	0042393	molecular_function	histone binding
A	0045944	biological_process	positive regulation of transcription by RNA polymerase II
A	0046777	biological_process	protein autophosphorylation
A	0051301	biological_process	cell division
A	0072354	molecular_function	histone H3T3 kinase activity
A	0090166	biological_process	Golgi disassembly
A	0106310	molecular_function	protein serine kinase activity
A	0120187	biological_process	positive regulation of protein localization to chromatin
A	0141003	molecular_function	histone H2AX kinase activity
A	2001222	biological_process	regulation of neuron migration
B	0000166	molecular_function	nucleotide binding
B	0000785	cellular_component	chromatin
B	0004672	molecular_function	protein kinase activity
B	0004674	molecular_function	protein serine/threonine kinase activity
B	0005515	molecular_function	protein binding
B	0005524	molecular_function	ATP binding
B	0005634	cellular_component	nucleus
B	0005654	cellular_component	nucleoplasm
B	0005730	cellular_component	nucleolus
B	0005737	cellular_component	cytoplasm
B	0005795	cellular_component	Golgi stack
B	0005829	cellular_component	cytosol
B	0006338	biological_process	chromatin remodeling
B	0006468	biological_process	protein phosphorylation
B	0006974	biological_process	DNA damage response
B	0007077	biological_process	mitotic nuclear membrane disassembly
B	0007165	biological_process	signal transduction
B	0015030	cellular_component	Cajal body
B	0016301	molecular_function	kinase activity
B	0016740	molecular_function	transferase activity
B	0019901	molecular_function	protein kinase binding
B	0030576	biological_process	Cajal body organization
B	0031175	biological_process	neuron projection development
B	0031492	molecular_function	nucleosomal DNA binding
B	0035175	molecular_function	histone H3S10 kinase activity
B	0042393	molecular_function	histone binding
B	0045944	biological_process	positive regulation of transcription by RNA polymerase II
B	0046777	biological_process	protein autophosphorylation
B	0051301	biological_process	cell division
B	0072354	molecular_function	histone H3T3 kinase activity
B	0090166	biological_process	Golgi disassembly
B	0106310	molecular_function	protein serine kinase activity
B	0120187	biological_process	positive regulation of protein localization to chromatin
B	0141003	molecular_function	histone H2AX kinase activity
B	2001222	biological_process	regulation of neuron migration
C	0000166	molecular_function	nucleotide binding
C	0000785	cellular_component	chromatin
C	0004672	molecular_function	protein kinase activity
C	0004674	molecular_function	protein serine/threonine kinase activity
C	0005515	molecular_function	protein binding
C	0005524	molecular_function	ATP binding
C	0005634	cellular_component	nucleus
C	0005654	cellular_component	nucleoplasm
C	0005730	cellular_component	nucleolus
C	0005737	cellular_component	cytoplasm
C	0005795	cellular_component	Golgi stack
C	0005829	cellular_component	cytosol
C	0006338	biological_process	chromatin remodeling
C	0006468	biological_process	protein phosphorylation
C	0006974	biological_process	DNA damage response
C	0007077	biological_process	mitotic nuclear membrane disassembly
C	0007165	biological_process	signal transduction
C	0015030	cellular_component	Cajal body
C	0016301	molecular_function	kinase activity
C	0016740	molecular_function	transferase activity
C	0019901	molecular_function	protein kinase binding
C	0030576	biological_process	Cajal body organization
C	0031175	biological_process	neuron projection development
C	0031492	molecular_function	nucleosomal DNA binding
C	0035175	molecular_function	histone H3S10 kinase activity
C	0042393	molecular_function	histone binding
C	0045944	biological_process	positive regulation of transcription by RNA polymerase II
C	0046777	biological_process	protein autophosphorylation
C	0051301	biological_process	cell division
C	0072354	molecular_function	histone H3T3 kinase activity
C	0090166	biological_process	Golgi disassembly
C	0106310	molecular_function	protein serine kinase activity
C	0120187	biological_process	positive regulation of protein localization to chromatin
C	0141003	molecular_function	histone H2AX kinase activity
C	2001222	biological_process	regulation of neuron migration
D	0000166	molecular_function	nucleotide binding
D	0000785	cellular_component	chromatin
D	0004672	molecular_function	protein kinase activity
D	0004674	molecular_function	protein serine/threonine kinase activity
D	0005515	molecular_function	protein binding
D	0005524	molecular_function	ATP binding
D	0005634	cellular_component	nucleus
D	0005654	cellular_component	nucleoplasm
D	0005730	cellular_component	nucleolus
D	0005737	cellular_component	cytoplasm
D	0005795	cellular_component	Golgi stack
D	0005829	cellular_component	cytosol
D	0006338	biological_process	chromatin remodeling
D	0006468	biological_process	protein phosphorylation
D	0006974	biological_process	DNA damage response
D	0007077	biological_process	mitotic nuclear membrane disassembly
D	0007165	biological_process	signal transduction
D	0015030	cellular_component	Cajal body
D	0016301	molecular_function	kinase activity
D	0016740	molecular_function	transferase activity
D	0019901	molecular_function	protein kinase binding
D	0030576	biological_process	Cajal body organization
D	0031175	biological_process	neuron projection development
D	0031492	molecular_function	nucleosomal DNA binding
D	0035175	molecular_function	histone H3S10 kinase activity
D	0042393	molecular_function	histone binding
D	0045944	biological_process	positive regulation of transcription by RNA polymerase II
D	0046777	biological_process	protein autophosphorylation
D	0051301	biological_process	cell division
D	0072354	molecular_function	histone H3T3 kinase activity
D	0090166	biological_process	Golgi disassembly
D	0106310	molecular_function	protein serine kinase activity
D	0120187	biological_process	positive regulation of protein localization to chromatin
D	0141003	molecular_function	histone H2AX kinase activity
D	2001222	biological_process	regulation of neuron migration

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue CL A 401

Chain	Residue
A	ARG148
A	HIS258

site_id	AC2
Number of Residues	2
Details	binding site for residue CL A 402

Chain	Residue
A	GLN95
A	HIS171

site_id	AC3
Number of Residues	11
Details	binding site for residue E8D A 403

Chain	Residue
A	PRO111
A	MET131
A	ASP132
A	ARG133
A	PHE134
A	ASP197
A	ILE43
A	VAL69
A	LYS71
A	GLU83
A	TYR87

site_id	AC4
Number of Residues	1
Details	binding site for residue CL B 402

Chain	Residue
B	HIS171

site_id	AC5
Number of Residues	2
Details	binding site for residue CL B 403

Chain	Residue
B	ARG148
B	HIS258

site_id	AC6
Number of Residues	13
Details	binding site for residue E8D B 404

Chain	Residue
B	ILE51
B	VAL69
B	LYS71
B	GLU83
B	PRO111
B	MET131
B	ASP132
B	ARG133
B	PHE134
B	VAL196
B	ASP197
B	HOH509
B	HOH624

site_id	AC7
Number of Residues	8
Details	binding site for residue SO4 C 401

Chain	Residue
C	ARG151
C	GLY297
C	HOH502
C	HOH536
C	HOH546
D	PRO291
D	ALA292
D	HOH587

site_id	AC8
Number of Residues	2
Details	binding site for residue CL C 402

Chain	Residue
C	ARG148
C	HIS258

site_id	AC9
Number of Residues	8
Details	binding site for residue GOL C 403

Chain	Residue
B	TYR213
B	ARG241
B	ASP310
B	TYR311
C	ARG203
C	GLU207
C	GOL404
C	HOH512

site_id	AD1
Number of Residues	7
Details	binding site for residue GOL C 404

Chain	Residue
B	ARG241
B	ASP310
B	HOH527
B	HOH640
C	ARG89
C	GOL403
C	HOH514

site_id	AD2
Number of Residues	1
Details	binding site for residue CL D 401

Chain	Residue
D	HIS171

site_id	AD3
Number of Residues	2
Details	binding site for residue CL D 402

Chain	Residue
D	ARG148
D	HIS258

site_id	AD4
Number of Residues	15
Details	binding site for residue E8D D 404

Chain	Residue
D	ILE43
D	ILE51
D	VAL69
D	LYS71
D	GLU83
D	PRO111
D	MET131
D	ASP132
D	ARG133
D	PHE134
D	LEU184
D	VAL196
D	ASP197
D	HOH508
D	HOH633

Functional Information from PROSITE/UniProt

site_id	PS00107
Number of Residues	29
Details	PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGQGGFGCIYlAdmnssesvgsdap.....CVVK

Chain	Residue	Details
A	ILE43-LYS71

site_id	PS00108
Number of Residues	13
Details	PROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. YvHgDIKasNLLL

Chain	Residue	Details
A	TYR173-LEU185

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	8
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)