6BMG
Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004601 | molecular_function | peroxidase activity |
| A | 0005344 | molecular_function | oxygen carrier activity |
| A | 0015671 | biological_process | oxygen transport |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016528 | cellular_component | sarcoplasm |
| A | 0019430 | biological_process | removal of superoxide radicals |
| A | 0019825 | molecular_function | oxygen binding |
| A | 0020037 | molecular_function | heme binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0070062 | cellular_component | extracellular exosome |
| A | 0098809 | molecular_function | nitrite reductase activity |
| B | 0004601 | molecular_function | peroxidase activity |
| B | 0005344 | molecular_function | oxygen carrier activity |
| B | 0015671 | biological_process | oxygen transport |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016528 | cellular_component | sarcoplasm |
| B | 0019430 | biological_process | removal of superoxide radicals |
| B | 0019825 | molecular_function | oxygen binding |
| B | 0020037 | molecular_function | heme binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0070062 | cellular_component | extracellular exosome |
| B | 0098809 | molecular_function | nitrite reductase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 19 |
| Details | binding site for residue HEM A 201 |
| Chain | Residue |
| A | LYS42 |
| A | HIS93 |
| A | HIS97 |
| A | ILE99 |
| A | TYR103 |
| A | OXY202 |
| A | HOH304 |
| A | HOH330 |
| A | HOH341 |
| A | HOH344 |
| B | LYS77 |
| A | PHE43 |
| A | ARG45 |
| A | HIS64 |
| A | THR67 |
| A | VAL68 |
| A | ALA71 |
| A | LEU89 |
| A | SER92 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue OXY A 202 |
| Chain | Residue |
| A | PHE43 |
| A | HIS64 |
| A | VAL68 |
| A | HEM201 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue CD A 203 |
| Chain | Residue |
| A | HIS35 |
| A | ACT213 |
| A | ACT214 |
| B | HIS116 |
| B | HOH338 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue CD A 204 |
| Chain | Residue |
| A | HIS36 |
| A | GLU38 |
| A | ASP126 |
| A | ACT210 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | binding site for residue CD A 205 |
| Chain | Residue |
| A | HIS12 |
| A | LYS16 |
| A | ASP122 |
| B | HIS12 |
| B | LYS16 |
| B | ASP122 |
| B | HOH374 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue CD A 206 |
| Chain | Residue |
| A | HIS119 |
| A | ASP122 |
| A | ACT212 |
| A | HOH412 |
| A | HOH428 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue CD A 207 |
| Chain | Residue |
| A | HIS116 |
| A | ACT209 |
| A | ACT211 |
| A | HOH357 |
| B | HIS35 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue CD A 208 |
| Chain | Residue |
| A | MET0 |
| A | HIS81 |
| A | HOH425 |
| A | HOH438 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 209 |
| Chain | Residue |
| A | HIS116 |
| A | GLN128 |
| A | CD207 |
| A | ACT211 |
| A | HOH384 |
| B | HIS35 |
| site_id | AD1 |
| Number of Residues | 9 |
| Details | binding site for residue ACT A 210 |
| Chain | Residue |
| A | HIS36 |
| A | GLU38 |
| A | PHE106 |
| A | ASP126 |
| A | CD204 |
| A | HOH307 |
| A | HOH348 |
| A | HOH390 |
| A | HOH413 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 211 |
| Chain | Residue |
| A | HIS116 |
| A | CD207 |
| A | ACT209 |
| A | HOH308 |
| A | HOH383 |
| B | HIS35 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue ACT A 212 |
| Chain | Residue |
| A | LYS16 |
| A | HIS119 |
| A | ASP122 |
| A | CD206 |
| A | HOH328 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue ACT A 213 |
| Chain | Residue |
| A | HIS35 |
| A | CD203 |
| A | ACT214 |
| A | HOH334 |
| B | HIS116 |
| B | GLN128 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue ACT A 214 |
| Chain | Residue |
| A | HIS35 |
| A | CD203 |
| A | ACT213 |
| A | HOH305 |
| B | HIS116 |
| site_id | AD6 |
| Number of Residues | 18 |
| Details | binding site for residue HEM B 201 |
| Chain | Residue |
| B | ILE99 |
| B | TYR103 |
| B | LEU104 |
| B | OXY202 |
| B | HOH305 |
| B | HOH313 |
| B | HOH357 |
| B | HOH370 |
| B | HOH388 |
| B | LYS42 |
| B | PHE43 |
| B | ARG45 |
| B | HIS64 |
| B | VAL68 |
| B | LEU89 |
| B | SER92 |
| B | HIS93 |
| B | HIS97 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue OXY B 202 |
| Chain | Residue |
| B | PHE43 |
| B | HIS64 |
| B | VAL68 |
| B | HEM201 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue CD B 203 |
| Chain | Residue |
| B | HIS36 |
| B | GLU38 |
| B | ASP126 |
| B | ACT205 |
| site_id | AD9 |
| Number of Residues | 3 |
| Details | binding site for residue CD B 204 |
| Chain | Residue |
| B | MET0 |
| B | HIS81 |
| B | HOH383 |
| site_id | AE1 |
| Number of Residues | 8 |
| Details | binding site for residue ACT B 205 |
| Chain | Residue |
| B | HIS36 |
| B | GLU38 |
| B | PHE106 |
| B | ASP126 |
| B | CD203 |
| B | HOH314 |
| B | HOH352 |
| B | HOH397 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 292 |
| Details | Domain: {"description":"Globin","evidences":[{"source":"PROSITE-ProRule","id":"PRU00238","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00238","evidenceCode":"ECO:0000255"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"NOV-2017","submissionDatabase":"PDB data bank","title":"Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy).","authors":["Samuel P.P.","Miller M.D.","Xu W.","Alvarado S.","Phillips G.N. Jr.","Olson J.S."]}},{"source":"PDB","id":"6BMG","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"proximal binding residue","evidences":[{"source":"PROSITE-ProRule","id":"PRU00238","evidenceCode":"ECO:0000255"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"NOV-2017","submissionDatabase":"PDB data bank","title":"Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy).","authors":["Samuel P.P.","Miller M.D.","Xu W.","Alvarado S.","Phillips G.N. Jr.","Olson J.S."]}},{"source":"PDB","id":"6BMG","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q9QZ76","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P04247","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
