6BJY
VSV Nucleocapsid with Polyamide Bound
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0005515 | molecular_function | protein binding |
A | 0019013 | cellular_component | viral nucleocapsid |
A | 0019029 | cellular_component | helical viral capsid |
A | 0019083 | biological_process | viral transcription |
A | 0030430 | cellular_component | host cell cytoplasm |
A | 0039703 | biological_process | RNA replication |
A | 1990904 | cellular_component | ribonucleoprotein complex |
B | 0003723 | molecular_function | RNA binding |
B | 0005515 | molecular_function | protein binding |
B | 0019013 | cellular_component | viral nucleocapsid |
B | 0019029 | cellular_component | helical viral capsid |
B | 0019083 | biological_process | viral transcription |
B | 0030430 | cellular_component | host cell cytoplasm |
B | 0039703 | biological_process | RNA replication |
B | 1990904 | cellular_component | ribonucleoprotein complex |
C | 0003723 | molecular_function | RNA binding |
C | 0005515 | molecular_function | protein binding |
C | 0019013 | cellular_component | viral nucleocapsid |
C | 0019029 | cellular_component | helical viral capsid |
C | 0019083 | biological_process | viral transcription |
C | 0030430 | cellular_component | host cell cytoplasm |
C | 0039703 | biological_process | RNA replication |
C | 1990904 | cellular_component | ribonucleoprotein complex |
D | 0003723 | molecular_function | RNA binding |
D | 0005515 | molecular_function | protein binding |
D | 0019013 | cellular_component | viral nucleocapsid |
D | 0019029 | cellular_component | helical viral capsid |
D | 0019083 | biological_process | viral transcription |
D | 0030430 | cellular_component | host cell cytoplasm |
D | 0039703 | biological_process | RNA replication |
D | 1990904 | cellular_component | ribonucleoprotein complex |
E | 0003723 | molecular_function | RNA binding |
E | 0005515 | molecular_function | protein binding |
E | 0019013 | cellular_component | viral nucleocapsid |
E | 0019029 | cellular_component | helical viral capsid |
E | 0019083 | biological_process | viral transcription |
E | 0030430 | cellular_component | host cell cytoplasm |
E | 0039703 | biological_process | RNA replication |
E | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | binding site for residue DV4 R 101 |
Chain | Residue |
A | GLN318 |
R | U31 |
A | ASP320 |
A | LYS410 |
B | THR311 |
B | ARG312 |
R | U23 |
R | U25 |
R | U26 |
R | U27 |
site_id | AC2 |
Number of Residues | 1 |
Details | binding site for residue IUM A 501 |
Chain | Residue |
A | ASP374 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue IUM A 502 |
Chain | Residue |
A | GLU253 |
A | GLU323 |
B | ASP343 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue IUM A 503 |
Chain | Residue |
A | ASP358 |
E | ASP384 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue IUM A 504 |
Chain | Residue |
A | ASP384 |
B | ASP358 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue IUM A 505 |
Chain | Residue |
A | ASP343 |
E | ARG252 |
E | GLU253 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue IUM B 501 |
Chain | Residue |
B | ASP374 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue IUM B 502 |
Chain | Residue |
B | GLU253 |
B | GLU323 |
C | GLY239 |
C | ASP343 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue IUM B 503 |
Chain | Residue |
B | ASP384 |
site_id | AD1 |
Number of Residues | 2 |
Details | binding site for residue IUM C 501 |
Chain | Residue |
C | ASP374 |
C | GLU377 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue IUM C 502 |
Chain | Residue |
C | GLU253 |
C | GLU323 |
D | ASP343 |
site_id | AD3 |
Number of Residues | 2 |
Details | binding site for residue IUM C 503 |
Chain | Residue |
C | ASP384 |
D | ASP358 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue IUM D 501 |
Chain | Residue |
D | GLN57 |
D | ASP123 |
D | ASP374 |
D | GLU377 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue IUM D 502 |
Chain | Residue |
D | GLU253 |
D | GLU323 |
E | GLY239 |
E | ASP343 |
site_id | AD6 |
Number of Residues | 2 |
Details | binding site for residue IUM E 501 |
Chain | Residue |
E | ASP123 |
E | ASP374 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue IUM E 502 |
Chain | Residue |
D | ASP384 |
E | ASP358 |