6BJY

VSV Nucleocapsid with Polyamide Bound

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0005515	molecular_function	protein binding
A	0019013	cellular_component	viral nucleocapsid
A	0019028	cellular_component	viral capsid
A	0019029	cellular_component	helical viral capsid
A	0019083	biological_process	viral transcription
A	0030430	cellular_component	host cell cytoplasm
A	0039703	biological_process	RNA replication
A	0044423	cellular_component	virion component
A	1990904	cellular_component	ribonucleoprotein complex
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0019013	cellular_component	viral nucleocapsid
B	0019028	cellular_component	viral capsid
B	0019029	cellular_component	helical viral capsid
B	0019083	biological_process	viral transcription
B	0030430	cellular_component	host cell cytoplasm
B	0039703	biological_process	RNA replication
B	0044423	cellular_component	virion component
B	1990904	cellular_component	ribonucleoprotein complex
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0019013	cellular_component	viral nucleocapsid
C	0019028	cellular_component	viral capsid
C	0019029	cellular_component	helical viral capsid
C	0019083	biological_process	viral transcription
C	0030430	cellular_component	host cell cytoplasm
C	0039703	biological_process	RNA replication
C	0044423	cellular_component	virion component
C	1990904	cellular_component	ribonucleoprotein complex
D	0003723	molecular_function	RNA binding
D	0005515	molecular_function	protein binding
D	0019013	cellular_component	viral nucleocapsid
D	0019028	cellular_component	viral capsid
D	0019029	cellular_component	helical viral capsid
D	0019083	biological_process	viral transcription
D	0030430	cellular_component	host cell cytoplasm
D	0039703	biological_process	RNA replication
D	0044423	cellular_component	virion component
D	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0019013	cellular_component	viral nucleocapsid
E	0019028	cellular_component	viral capsid
E	0019029	cellular_component	helical viral capsid
E	0019083	biological_process	viral transcription
E	0030430	cellular_component	host cell cytoplasm
E	0039703	biological_process	RNA replication
E	0044423	cellular_component	virion component
E	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	10
Details	binding site for residue DV4 R 101

Chain	Residue
A	GLN318
R	U31
A	ASP320
A	LYS410
B	THR311
B	ARG312
R	U23
R	U25
R	U26
R	U27

---

site_id	AC2
Number of Residues	1
Details	binding site for residue IUM A 501

Chain	Residue
A	ASP374

---

site_id	AC3
Number of Residues	3
Details	binding site for residue IUM A 502

Chain	Residue
A	GLU253
A	GLU323
B	ASP343

---

site_id	AC4
Number of Residues	2
Details	binding site for residue IUM A 503

Chain	Residue
A	ASP358
E	ASP384

---

site_id	AC5
Number of Residues	2
Details	binding site for residue IUM A 504

Chain	Residue
A	ASP384
B	ASP358

---

site_id	AC6
Number of Residues	3
Details	binding site for residue IUM A 505

Chain	Residue
A	ASP343
E	ARG252
E	GLU253

---

site_id	AC7
Number of Residues	1
Details	binding site for residue IUM B 501

Chain	Residue
B	ASP374

---

site_id	AC8
Number of Residues	4
Details	binding site for residue IUM B 502

Chain	Residue
B	GLU253
B	GLU323
C	GLY239
C	ASP343

---

site_id	AC9
Number of Residues	1
Details	binding site for residue IUM B 503

Chain	Residue
B	ASP384

---

site_id	AD1
Number of Residues	2
Details	binding site for residue IUM C 501

Chain	Residue
C	ASP374
C	GLU377

---

site_id	AD2
Number of Residues	3
Details	binding site for residue IUM C 502

Chain	Residue
C	GLU253
C	GLU323
D	ASP343

---

site_id	AD3
Number of Residues	2
Details	binding site for residue IUM C 503

Chain	Residue
C	ASP384
D	ASP358

---

site_id	AD4
Number of Residues	4
Details	binding site for residue IUM D 501

Chain	Residue
D	GLN57
D	ASP123
D	ASP374
D	GLU377

---

site_id	AD5
Number of Residues	4
Details	binding site for residue IUM D 502

Chain	Residue
D	GLU253
D	GLU323
E	GLY239
E	ASP343

---

site_id	AD6
Number of Residues	2
Details	binding site for residue IUM E 501

Chain	Residue
E	ASP123
E	ASP374

---

site_id	AD7
Number of Residues	2
Details	binding site for residue IUM E 502

Chain	Residue
D	ASP384
E	ASP358

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	80
Details	Region: {"description":"Interaction with the phosphoprotein","evidences":[{"source":"PubMed","id":"28396572","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	35
Details	Binding site: {"evidences":[{"source":"PubMed","id":"35970826","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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