6BJY
VSV Nucleocapsid with Polyamide Bound
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0019013 | cellular_component | viral nucleocapsid |
| A | 0019029 | cellular_component | helical viral capsid |
| A | 0019083 | biological_process | viral transcription |
| A | 0030430 | cellular_component | host cell cytoplasm |
| A | 0039703 | biological_process | RNA replication |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0019013 | cellular_component | viral nucleocapsid |
| B | 0019029 | cellular_component | helical viral capsid |
| B | 0019083 | biological_process | viral transcription |
| B | 0030430 | cellular_component | host cell cytoplasm |
| B | 0039703 | biological_process | RNA replication |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0003723 | molecular_function | RNA binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0019013 | cellular_component | viral nucleocapsid |
| C | 0019029 | cellular_component | helical viral capsid |
| C | 0019083 | biological_process | viral transcription |
| C | 0030430 | cellular_component | host cell cytoplasm |
| C | 0039703 | biological_process | RNA replication |
| C | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0003723 | molecular_function | RNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0019013 | cellular_component | viral nucleocapsid |
| D | 0019029 | cellular_component | helical viral capsid |
| D | 0019083 | biological_process | viral transcription |
| D | 0030430 | cellular_component | host cell cytoplasm |
| D | 0039703 | biological_process | RNA replication |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0003723 | molecular_function | RNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0019013 | cellular_component | viral nucleocapsid |
| E | 0019029 | cellular_component | helical viral capsid |
| E | 0019083 | biological_process | viral transcription |
| E | 0030430 | cellular_component | host cell cytoplasm |
| E | 0039703 | biological_process | RNA replication |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | binding site for residue DV4 R 101 |
| Chain | Residue |
| A | GLN318 |
| R | U31 |
| A | ASP320 |
| A | LYS410 |
| B | THR311 |
| B | ARG312 |
| R | U23 |
| R | U25 |
| R | U26 |
| R | U27 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | binding site for residue IUM A 501 |
| Chain | Residue |
| A | ASP374 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue IUM A 502 |
| Chain | Residue |
| A | GLU253 |
| A | GLU323 |
| B | ASP343 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue IUM A 503 |
| Chain | Residue |
| A | ASP358 |
| E | ASP384 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue IUM A 504 |
| Chain | Residue |
| A | ASP384 |
| B | ASP358 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue IUM A 505 |
| Chain | Residue |
| A | ASP343 |
| E | ARG252 |
| E | GLU253 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue IUM B 501 |
| Chain | Residue |
| B | ASP374 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue IUM B 502 |
| Chain | Residue |
| B | GLU253 |
| B | GLU323 |
| C | GLY239 |
| C | ASP343 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue IUM B 503 |
| Chain | Residue |
| B | ASP384 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue IUM C 501 |
| Chain | Residue |
| C | ASP374 |
| C | GLU377 |
| site_id | AD2 |
| Number of Residues | 3 |
| Details | binding site for residue IUM C 502 |
| Chain | Residue |
| C | GLU253 |
| C | GLU323 |
| D | ASP343 |
| site_id | AD3 |
| Number of Residues | 2 |
| Details | binding site for residue IUM C 503 |
| Chain | Residue |
| C | ASP384 |
| D | ASP358 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue IUM D 501 |
| Chain | Residue |
| D | GLN57 |
| D | ASP123 |
| D | ASP374 |
| D | GLU377 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue IUM D 502 |
| Chain | Residue |
| D | GLU253 |
| D | GLU323 |
| E | GLY239 |
| E | ASP343 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue IUM E 501 |
| Chain | Residue |
| E | ASP123 |
| E | ASP374 |
| site_id | AD7 |
| Number of Residues | 2 |
| Details | binding site for residue IUM E 502 |
| Chain | Residue |
| D | ASP384 |
| E | ASP358 |
