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6BFG

Crystal structure of monotopic membrane protein (S)-mandelate dehydrogenase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0009056biological_processcatabolic process
A0010181molecular_functionFMN binding
A0016491molecular_functionoxidoreductase activity
A0018924biological_processmandelate metabolic process
A0019596biological_processmandelate catabolic process
A0033720molecular_function(S)-mandelate dehydrogenase activity
B0005886cellular_componentplasma membrane
B0009056biological_processcatabolic process
B0010181molecular_functionFMN binding
B0016491molecular_functionoxidoreductase activity
B0018924biological_processmandelate metabolic process
B0019596biological_processmandelate catabolic process
B0033720molecular_function(S)-mandelate dehydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues25
Detailsbinding site for residue FMN A 401
ChainResidue
ATYR26
ALYS250
ASER272
AHIS274
AGLY275
AARG277
AASP303
ASER304
AGLY305
AARG307
AGLY326
ALEU27
AARG327
AGOL404
AHOH552
AHOH563
AHOH584
AHOH599
APRO79
ATHR80
AGLY81
ASER108
AGLN129
ATYR131
ATHR156

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 402
ChainResidue
AASP196
AGOL403

site_idAC3
Number of Residues2
Detailsbinding site for residue GOL A 403
ChainResidue
AARG192
AGOL402

site_idAC4
Number of Residues6
Detailsbinding site for residue GOL A 404
ChainResidue
ATYR26
ATYR131
AARG165
AHIS274
AARG277
AFMN401

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 405
ChainResidue
AASP186
ALEU189

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 408
ChainResidue
ATYR24
AGLU28
AARG167

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO A 409
ChainResidue
ALYS52
AARG53
AVAL55
AALA357
AHOH511
BTHR157
BALA160

site_idAC8
Number of Residues3
Detailsbinding site for residue CIT A 410
ChainResidue
ALYS17
APRO191
AARG192

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 411
ChainResidue
APRO88
ALYS89
ALEU92
AALA93
AGLU338
BASP123

site_idAD1
Number of Residues23
Detailsbinding site for residue FMN B 401
ChainResidue
BPRO79
BTHR80
BGLY81
BSER108
BGLN129
BTYR131
BTHR156
BLYS250
BSER272
BHIS274
BGLY275
BARG277
BASP303
BSER304
BGLY305
BARG307
BGLY326
BARG327
BGOL403
BHOH511
BHOH555
BHOH563
BHOH572

site_idAD2
Number of Residues2
Detailsbinding site for residue PEG B 402
ChainResidue
BARG192
BASP196

site_idAD3
Number of Residues6
Detailsbinding site for residue GOL B 403
ChainResidue
BTYR26
BTYR131
BARG165
BHIS274
BARG277
BFMN401

site_idAD4
Number of Residues2
Detailsbinding site for residue PO4 B 404
ChainResidue
BASP186
BLEU189

site_idAD5
Number of Residues3
Detailsbinding site for residue NA B 405
ChainResidue
BSER114
BILE115
BGLU116

site_idAD6
Number of Residues8
Detailsbinding site for residue EDO B 406
ChainResidue
BHOH515
ATYR164
BPHE6
BASN7
BLEU347
BALA350
BASP351
BARG354

site_idAD7
Number of Residues8
Detailsbinding site for residue LMT B 407
ChainResidue
BASN162
BPHE173
BILE175
BMET177
BVAL183
BGLY187
BPHE197
BMET202

site_idAD8
Number of Residues8
Detailsbinding site for residue EDO B 408
ChainResidue
ATHR157
AALA160
BLYS52
BARG53
BVAL55
BALA357
BGLY360
BHOH561

Functional Information from PROSITE/UniProt
site_idPS00557
Number of Residues7
DetailsFMN_HYDROXY_ACID_DH_1 FMN-dependent alpha-hydroxy acid dehydrogenases active site. SNHGGRQ
ChainResidueDetails
ASER272-GLN278

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00683
ChainResidueDetails
AHIS274
BHIS274

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000305|PubMed:19465768, ECO:0007744|PDB:2A85
ChainResidueDetails
ATYR26
BARG277
ATYR131
AARG165
AHIS274
AARG277
BTYR26
BTYR131
BARG165
BHIS274

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:14604988, ECO:0000269|PubMed:30071260, ECO:0007744|PDB:1P4C, ECO:0007744|PDB:6BFG
ChainResidueDetails
APRO79
BGLN129
BTHR156
BLYS250
BASP303
BGLY326
ASER108
AGLN129
ATHR156
ALYS250
AASP303
AGLY326
BPRO79
BSER108

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PDB entries from 2024-07-10

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