6BFG
Crystal structure of monotopic membrane protein (S)-mandelate dehydrogenase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004459 | molecular_function | L-lactate dehydrogenase (NAD+) activity |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0009060 | biological_process | aerobic respiration |
| A | 0010181 | molecular_function | FMN binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors |
| A | 0018924 | biological_process | mandelate metabolic process |
| A | 0019596 | biological_process | mandelate catabolic process |
| A | 0033720 | molecular_function | (S)-mandelate dehydrogenase activity |
| B | 0004459 | molecular_function | L-lactate dehydrogenase (NAD+) activity |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0009060 | biological_process | aerobic respiration |
| B | 0010181 | molecular_function | FMN binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors |
| B | 0018924 | biological_process | mandelate metabolic process |
| B | 0019596 | biological_process | mandelate catabolic process |
| B | 0033720 | molecular_function | (S)-mandelate dehydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 25 |
| Details | binding site for residue FMN A 401 |
| Chain | Residue |
| A | TYR26 |
| A | LYS250 |
| A | SER272 |
| A | HIS274 |
| A | GLY275 |
| A | ARG277 |
| A | ASP303 |
| A | SER304 |
| A | GLY305 |
| A | ARG307 |
| A | GLY326 |
| A | LEU27 |
| A | ARG327 |
| A | GOL404 |
| A | HOH552 |
| A | HOH563 |
| A | HOH584 |
| A | HOH599 |
| A | PRO79 |
| A | THR80 |
| A | GLY81 |
| A | SER108 |
| A | GLN129 |
| A | TYR131 |
| A | THR156 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue GOL A 402 |
| Chain | Residue |
| A | ASP196 |
| A | GOL403 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue GOL A 403 |
| Chain | Residue |
| A | ARG192 |
| A | GOL402 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 404 |
| Chain | Residue |
| A | TYR26 |
| A | TYR131 |
| A | ARG165 |
| A | HIS274 |
| A | ARG277 |
| A | FMN401 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 405 |
| Chain | Residue |
| A | ASP186 |
| A | LEU189 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 408 |
| Chain | Residue |
| A | TYR24 |
| A | GLU28 |
| A | ARG167 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 409 |
| Chain | Residue |
| A | LYS52 |
| A | ARG53 |
| A | VAL55 |
| A | ALA357 |
| A | HOH511 |
| B | THR157 |
| B | ALA160 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | binding site for residue CIT A 410 |
| Chain | Residue |
| A | LYS17 |
| A | PRO191 |
| A | ARG192 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 411 |
| Chain | Residue |
| A | PRO88 |
| A | LYS89 |
| A | LEU92 |
| A | ALA93 |
| A | GLU338 |
| B | ASP123 |
| site_id | AD1 |
| Number of Residues | 23 |
| Details | binding site for residue FMN B 401 |
| Chain | Residue |
| B | PRO79 |
| B | THR80 |
| B | GLY81 |
| B | SER108 |
| B | GLN129 |
| B | TYR131 |
| B | THR156 |
| B | LYS250 |
| B | SER272 |
| B | HIS274 |
| B | GLY275 |
| B | ARG277 |
| B | ASP303 |
| B | SER304 |
| B | GLY305 |
| B | ARG307 |
| B | GLY326 |
| B | ARG327 |
| B | GOL403 |
| B | HOH511 |
| B | HOH555 |
| B | HOH563 |
| B | HOH572 |
| site_id | AD2 |
| Number of Residues | 2 |
| Details | binding site for residue PEG B 402 |
| Chain | Residue |
| B | ARG192 |
| B | ASP196 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 403 |
| Chain | Residue |
| B | TYR26 |
| B | TYR131 |
| B | ARG165 |
| B | HIS274 |
| B | ARG277 |
| B | FMN401 |
| site_id | AD4 |
| Number of Residues | 2 |
| Details | binding site for residue PO4 B 404 |
| Chain | Residue |
| B | ASP186 |
| B | LEU189 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue NA B 405 |
| Chain | Residue |
| B | SER114 |
| B | ILE115 |
| B | GLU116 |
| site_id | AD6 |
| Number of Residues | 8 |
| Details | binding site for residue EDO B 406 |
| Chain | Residue |
| B | HOH515 |
| A | TYR164 |
| B | PHE6 |
| B | ASN7 |
| B | LEU347 |
| B | ALA350 |
| B | ASP351 |
| B | ARG354 |
| site_id | AD7 |
| Number of Residues | 8 |
| Details | binding site for residue LMT B 407 |
| Chain | Residue |
| B | ASN162 |
| B | PHE173 |
| B | ILE175 |
| B | MET177 |
| B | VAL183 |
| B | GLY187 |
| B | PHE197 |
| B | MET202 |
| site_id | AD8 |
| Number of Residues | 8 |
| Details | binding site for residue EDO B 408 |
| Chain | Residue |
| A | THR157 |
| A | ALA160 |
| B | LYS52 |
| B | ARG53 |
| B | VAL55 |
| B | ALA357 |
| B | GLY360 |
| B | HOH561 |
Functional Information from PROSITE/UniProt
| site_id | PS00557 |
| Number of Residues | 7 |
| Details | FMN_HYDROXY_ACID_DH_1 FMN-dependent alpha-hydroxy acid dehydrogenases active site. SNHGGRQ |
| Chain | Residue | Details |
| A | SER272-GLN278 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00683","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 10 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"19465768","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2A85","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 22 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"14604988","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30071260","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1P4C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6BFG","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
