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6BBM

Mechanisms of Opening and Closing of the Bacterial Replicative Helicase: The DnaB Helicase and Lambda P Helicase Loader Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003677molecular_functionDNA binding
A0003678molecular_functionDNA helicase activity
A0004386molecular_functionhelicase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005829cellular_componentcytosol
A0006260biological_processDNA replication
A0006269biological_processDNA replication, synthesis of primer
A0006270biological_processDNA replication initiation
A0010212biological_processresponse to ionizing radiation
A0016787molecular_functionhydrolase activity
A0016853molecular_functionisomerase activity
A0016887molecular_functionATP hydrolysis activity
A0030894cellular_componentreplisome
A0031297biological_processreplication fork processing
A0033202cellular_componentDNA helicase complex
A0042802molecular_functionidentical protein binding
A0043139molecular_function5'-3' DNA helicase activity
A1990077cellular_componentprimosome complex
A1990100cellular_componentDnaB-DnaC complex
A1990156cellular_componentDnaB-DnaG complex
A1990158cellular_componentDnaB-DnaC-DnaT-PriA-PriB complex
A1990159cellular_componentDnaB-DnaC-DnaT-PriA-PriC complex
A1990160cellular_componentDnaB-DnaC-Rep-PriC complex
B0000166molecular_functionnucleotide binding
B0003677molecular_functionDNA binding
B0003678molecular_functionDNA helicase activity
B0004386molecular_functionhelicase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005829cellular_componentcytosol
B0006260biological_processDNA replication
B0006269biological_processDNA replication, synthesis of primer
B0006270biological_processDNA replication initiation
B0010212biological_processresponse to ionizing radiation
B0016787molecular_functionhydrolase activity
B0016853molecular_functionisomerase activity
B0016887molecular_functionATP hydrolysis activity
B0030894cellular_componentreplisome
B0031297biological_processreplication fork processing
B0033202cellular_componentDNA helicase complex
B0042802molecular_functionidentical protein binding
B0043139molecular_function5'-3' DNA helicase activity
B1990077cellular_componentprimosome complex
B1990100cellular_componentDnaB-DnaC complex
B1990156cellular_componentDnaB-DnaG complex
B1990158cellular_componentDnaB-DnaC-DnaT-PriA-PriB complex
B1990159cellular_componentDnaB-DnaC-DnaT-PriA-PriC complex
B1990160cellular_componentDnaB-DnaC-Rep-PriC complex
C0000166molecular_functionnucleotide binding
C0003677molecular_functionDNA binding
C0003678molecular_functionDNA helicase activity
C0004386molecular_functionhelicase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005829cellular_componentcytosol
C0006260biological_processDNA replication
C0006269biological_processDNA replication, synthesis of primer
C0006270biological_processDNA replication initiation
C0010212biological_processresponse to ionizing radiation
C0016787molecular_functionhydrolase activity
C0016853molecular_functionisomerase activity
C0016887molecular_functionATP hydrolysis activity
C0030894cellular_componentreplisome
C0031297biological_processreplication fork processing
C0033202cellular_componentDNA helicase complex
C0042802molecular_functionidentical protein binding
C0043139molecular_function5'-3' DNA helicase activity
C1990077cellular_componentprimosome complex
C1990100cellular_componentDnaB-DnaC complex
C1990156cellular_componentDnaB-DnaG complex
C1990158cellular_componentDnaB-DnaC-DnaT-PriA-PriB complex
C1990159cellular_componentDnaB-DnaC-DnaT-PriA-PriC complex
C1990160cellular_componentDnaB-DnaC-Rep-PriC complex
D0000166molecular_functionnucleotide binding
D0003677molecular_functionDNA binding
D0003678molecular_functionDNA helicase activity
D0004386molecular_functionhelicase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005829cellular_componentcytosol
D0006260biological_processDNA replication
D0006269biological_processDNA replication, synthesis of primer
D0006270biological_processDNA replication initiation
D0010212biological_processresponse to ionizing radiation
D0016787molecular_functionhydrolase activity
D0016853molecular_functionisomerase activity
D0016887molecular_functionATP hydrolysis activity
D0030894cellular_componentreplisome
D0031297biological_processreplication fork processing
D0033202cellular_componentDNA helicase complex
D0042802molecular_functionidentical protein binding
D0043139molecular_function5'-3' DNA helicase activity
D1990077cellular_componentprimosome complex
D1990100cellular_componentDnaB-DnaC complex
D1990156cellular_componentDnaB-DnaG complex
D1990158cellular_componentDnaB-DnaC-DnaT-PriA-PriB complex
D1990159cellular_componentDnaB-DnaC-DnaT-PriA-PriC complex
D1990160cellular_componentDnaB-DnaC-Rep-PriC complex
E0000166molecular_functionnucleotide binding
E0003677molecular_functionDNA binding
E0003678molecular_functionDNA helicase activity
E0004386molecular_functionhelicase activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005829cellular_componentcytosol
E0006260biological_processDNA replication
E0006269biological_processDNA replication, synthesis of primer
E0006270biological_processDNA replication initiation
E0010212biological_processresponse to ionizing radiation
E0016787molecular_functionhydrolase activity
E0016853molecular_functionisomerase activity
E0016887molecular_functionATP hydrolysis activity
E0030894cellular_componentreplisome
E0031297biological_processreplication fork processing
E0033202cellular_componentDNA helicase complex
E0042802molecular_functionidentical protein binding
E0043139molecular_function5'-3' DNA helicase activity
E1990077cellular_componentprimosome complex
E1990100cellular_componentDnaB-DnaC complex
E1990156cellular_componentDnaB-DnaG complex
E1990158cellular_componentDnaB-DnaC-DnaT-PriA-PriB complex
E1990159cellular_componentDnaB-DnaC-DnaT-PriA-PriC complex
E1990160cellular_componentDnaB-DnaC-Rep-PriC complex
F0000166molecular_functionnucleotide binding
F0003677molecular_functionDNA binding
F0003678molecular_functionDNA helicase activity
F0004386molecular_functionhelicase activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005829cellular_componentcytosol
F0006260biological_processDNA replication
F0006269biological_processDNA replication, synthesis of primer
F0006270biological_processDNA replication initiation
F0010212biological_processresponse to ionizing radiation
F0016787molecular_functionhydrolase activity
F0016853molecular_functionisomerase activity
F0016887molecular_functionATP hydrolysis activity
F0030894cellular_componentreplisome
F0031297biological_processreplication fork processing
F0033202cellular_componentDNA helicase complex
F0042802molecular_functionidentical protein binding
F0043139molecular_function5'-3' DNA helicase activity
F1990077cellular_componentprimosome complex
F1990100cellular_componentDnaB-DnaC complex
F1990156cellular_componentDnaB-DnaG complex
F1990158cellular_componentDnaB-DnaC-DnaT-PriA-PriB complex
F1990159cellular_componentDnaB-DnaC-DnaT-PriA-PriC complex
F1990160cellular_componentDnaB-DnaC-Rep-PriC complex
V0006270biological_processDNA replication initiation
W0006270biological_processDNA replication initiation
X0006270biological_processDNA replication initiation
Y0006270biological_processDNA replication initiation
Z0006270biological_processDNA replication initiation
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue ADP A 500
ChainResidue
ASER234
FASN443
AGLY236
ALYS237
ATHR238
ATHR239
AARG271
AGLN281
AGLY455
FARG442

site_idAC2
Number of Residues14
Detailsbinding site for residue ADP C 500
ChainResidue
BARG442
BASN443
BGLY444
CARG232
CPRO233
CSER234
CMET235
CGLY236
CLYS237
CTHR238
CTHR239
CGLU262
CARG271
CARG420

site_idAC3
Number of Residues13
Detailsbinding site for residue ADP E 501
ChainResidue
DARG442
DGLY444
ESER234
EGLY236
ELYS237
ETHR238
ETHR239
EGLU262
EMET263
EARG271
EASP280
EGLN281
EGLY455

site_idAC4
Number of Residues10
Detailsbinding site for residue ADP E 502
ChainResidue
EARG442
FSER234
FMET235
FGLY236
FLYS237
FTHR238
FTHR239
FARG271
FGLN281
FGLY455

site_idAC5
Number of Residues6
Detailsbinding site for residue ADP W 500
ChainResidue
CARG442
DSER234
DGLY236
DLYS237
DTHR238
DARG271

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30582519","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"6BBM","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1068
DetailsDomain: {"description":"SF4 helicase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00596","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

242500

PDB entries from 2025-10-01

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