6BAJ
Cryo-EM structure of lipid bilayer in the native cell membrane nanoparticles of AcrB
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0009410 | biological_process | response to xenobiotic stimulus |
| A | 0009636 | biological_process | response to toxic substance |
| A | 0015125 | molecular_function | bile acid transmembrane transporter activity |
| A | 0015562 | molecular_function | efflux transmembrane transporter activity |
| A | 0015567 | molecular_function | alkane transmembrane transporter activity |
| A | 0015721 | biological_process | bile acid and bile salt transport |
| A | 0015895 | biological_process | alkane transport |
| A | 0015908 | biological_process | fatty acid transport |
| A | 0016020 | cellular_component | membrane |
| A | 0022857 | molecular_function | transmembrane transporter activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0042908 | biological_process | xenobiotic transport |
| A | 0042910 | molecular_function | xenobiotic transmembrane transporter activity |
| A | 0042930 | biological_process | enterobactin transport |
| A | 0042931 | molecular_function | enterobactin transmembrane transporter activity |
| A | 0046677 | biological_process | response to antibiotic |
| A | 0055085 | biological_process | transmembrane transport |
| A | 0098567 | cellular_component | periplasmic side of plasma membrane |
| A | 0140330 | biological_process | xenobiotic detoxification by transmembrane export across the cell outer membrane |
| A | 1990281 | cellular_component | efflux pump complex |
| B | 0005515 | molecular_function | protein binding |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0009410 | biological_process | response to xenobiotic stimulus |
| B | 0009636 | biological_process | response to toxic substance |
| B | 0015125 | molecular_function | bile acid transmembrane transporter activity |
| B | 0015562 | molecular_function | efflux transmembrane transporter activity |
| B | 0015567 | molecular_function | alkane transmembrane transporter activity |
| B | 0015721 | biological_process | bile acid and bile salt transport |
| B | 0015895 | biological_process | alkane transport |
| B | 0015908 | biological_process | fatty acid transport |
| B | 0016020 | cellular_component | membrane |
| B | 0022857 | molecular_function | transmembrane transporter activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0042908 | biological_process | xenobiotic transport |
| B | 0042910 | molecular_function | xenobiotic transmembrane transporter activity |
| B | 0042930 | biological_process | enterobactin transport |
| B | 0042931 | molecular_function | enterobactin transmembrane transporter activity |
| B | 0046677 | biological_process | response to antibiotic |
| B | 0055085 | biological_process | transmembrane transport |
| B | 0098567 | cellular_component | periplasmic side of plasma membrane |
| B | 0140330 | biological_process | xenobiotic detoxification by transmembrane export across the cell outer membrane |
| B | 1990281 | cellular_component | efflux pump complex |
| C | 0005515 | molecular_function | protein binding |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0009410 | biological_process | response to xenobiotic stimulus |
| C | 0009636 | biological_process | response to toxic substance |
| C | 0015125 | molecular_function | bile acid transmembrane transporter activity |
| C | 0015562 | molecular_function | efflux transmembrane transporter activity |
| C | 0015567 | molecular_function | alkane transmembrane transporter activity |
| C | 0015721 | biological_process | bile acid and bile salt transport |
| C | 0015895 | biological_process | alkane transport |
| C | 0015908 | biological_process | fatty acid transport |
| C | 0016020 | cellular_component | membrane |
| C | 0022857 | molecular_function | transmembrane transporter activity |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0042908 | biological_process | xenobiotic transport |
| C | 0042910 | molecular_function | xenobiotic transmembrane transporter activity |
| C | 0042930 | biological_process | enterobactin transport |
| C | 0042931 | molecular_function | enterobactin transmembrane transporter activity |
| C | 0046677 | biological_process | response to antibiotic |
| C | 0055085 | biological_process | transmembrane transport |
| C | 0098567 | cellular_component | periplasmic side of plasma membrane |
| C | 0140330 | biological_process | xenobiotic detoxification by transmembrane export across the cell outer membrane |
| C | 1990281 | cellular_component | efflux pump complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue PTY B 1101 |
| Chain | Residue |
| B | PHE4 |
| B | ARG8 |
| B | PTY1102 |
| C | LEU891 |
| C | D121114 |
| C | D121116 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue PTY B 1102 |
| Chain | Residue |
| B | PTY1103 |
| B | PTY1104 |
| B | MET1 |
| B | PHE4 |
| B | PTY1101 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue PTY B 1103 |
| Chain | Residue |
| A | PTY1103 |
| B | MET1 |
| B | GLN439 |
| B | PTY1102 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue PTY B 1104 |
| Chain | Residue |
| A | PTY1103 |
| A | PTY1109 |
| B | PTY1102 |
| C | D121112 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue PTY B 1105 |
| Chain | Residue |
| A | PTY1106 |
| B | PTY1107 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue PTY B 1106 |
| Chain | Residue |
| B | ALA26 |
| B | ALA384 |
| B | PTY1108 |
| C | PTY1102 |
| C | PTY1108 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue PTY B 1107 |
| Chain | Residue |
| B | PHE386 |
| B | SER450 |
| B | VAL454 |
| B | PHE458 |
| B | PTY1105 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue PTY B 1108 |
| Chain | Residue |
| A | PTY1108 |
| A | PTY1111 |
| B | PTY1106 |
| C | PTY1108 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | binding site for residue PTY B 1109 |
| Chain | Residue |
| B | LYS334 |
| B | HIS338 |
| B | VAL341 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue D12 B 1110 |
| Chain | Residue |
| C | TRP895 |
| site_id | AD2 |
| Number of Residues | 1 |
| Details | binding site for residue D12 B 1112 |
| Chain | Residue |
| B | MET20 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue D12 B 1113 |
| Chain | Residue |
| B | HIS526 |
| site_id | AD4 |
| Number of Residues | 1 |
| Details | binding site for residue D12 B 1115 |
| Chain | Residue |
| B | PHE899 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue PTY C 1101 |
| Chain | Residue |
| A | PTY1102 |
| C | MET1 |
| C | PTY1110 |
| C | D121112 |
| site_id | AD6 |
| Number of Residues | 6 |
| Details | binding site for residue PTY C 1102 |
| Chain | Residue |
| B | LYS29 |
| B | PTY1106 |
| C | PHE458 |
| C | PHE459 |
| C | GLY460 |
| C | PTY1108 |
| site_id | AD7 |
| Number of Residues | 2 |
| Details | binding site for residue PTY C 1103 |
| Chain | Residue |
| C | TRP895 |
| C | SER896 |
| site_id | AD8 |
| Number of Residues | 2 |
| Details | binding site for residue PTY C 1104 |
| Chain | Residue |
| C | LYS334 |
| C | ILE337 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue PTY C 1105 |
| Chain | Residue |
| A | PTY1107 |
| C | TRP13 |
| C | ILE17 |
| C | PTY1107 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue PTY C 1106 |
| Chain | Residue |
| C | PHE556 |
| C | VAL557 |
| C | PRO874 |
| site_id | AE2 |
| Number of Residues | 4 |
| Details | binding site for residue PTY C 1107 |
| Chain | Residue |
| C | MET20 |
| C | THR369 |
| C | LEU376 |
| C | PTY1105 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue PTY C 1108 |
| Chain | Residue |
| B | PTY1106 |
| B | PTY1108 |
| C | PHE458 |
| C | PTY1102 |
| C | PTY1111 |
| site_id | AE4 |
| Number of Residues | 5 |
| Details | binding site for residue PTY C 1109 |
| Chain | Residue |
| A | PHE458 |
| A | PTY1110 |
| C | ALA26 |
| C | LYS29 |
| C | ALA384 |
| site_id | AE5 |
| Number of Residues | 9 |
| Details | binding site for residue PTY C 1110 |
| Chain | Residue |
| A | GLY440 |
| A | MET447 |
| A | CYS887 |
| A | GLU947 |
| A | PTY1102 |
| C | ARG8 |
| C | PHE11 |
| C | ILE18 |
| C | PTY1101 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue PTY C 1111 |
| Chain | Residue |
| C | VAL475 |
| C | PTY1108 |
| site_id | AE7 |
| Number of Residues | 3 |
| Details | binding site for residue D12 C 1112 |
| Chain | Residue |
| A | PTY1102 |
| B | PTY1104 |
| C | PTY1101 |
| site_id | AE8 |
| Number of Residues | 1 |
| Details | binding site for residue D12 C 1113 |
| Chain | Residue |
| C | LEU483 |
| site_id | AE9 |
| Number of Residues | 1 |
| Details | binding site for residue D12 C 1114 |
| Chain | Residue |
| B | PTY1101 |
| site_id | AF1 |
| Number of Residues | 1 |
| Details | binding site for residue D12 C 1116 |
| Chain | Residue |
| B | PTY1101 |
| site_id | AF2 |
| Number of Residues | 2 |
| Details | binding site for residue PTY A 1101 |
| Chain | Residue |
| A | TRP13 |
| B | SER875 |
| site_id | AF3 |
| Number of Residues | 4 |
| Details | binding site for residue PTY A 1102 |
| Chain | Residue |
| C | D121112 |
| A | PTY1109 |
| C | PTY1101 |
| C | PTY1110 |
| site_id | AF4 |
| Number of Residues | 7 |
| Details | binding site for residue PTY A 1103 |
| Chain | Residue |
| A | MET1 |
| A | PHE4 |
| A | PHE5 |
| A | LEU483 |
| A | PTY1109 |
| B | PTY1103 |
| B | PTY1104 |
| site_id | AF5 |
| Number of Residues | 4 |
| Details | binding site for residue PTY A 1104 |
| Chain | Residue |
| A | PHE4 |
| A | ARG8 |
| A | PHE11 |
| B | GLY440 |
| site_id | AF6 |
| Number of Residues | 6 |
| Details | binding site for residue PTY A 1105 |
| Chain | Residue |
| A | ILE27 |
| A | LYS334 |
| A | ILE337 |
| A | HIS338 |
| A | PHE380 |
| A | ILE390 |
| site_id | AF7 |
| Number of Residues | 4 |
| Details | binding site for residue PTY A 1106 |
| Chain | Residue |
| A | LYS29 |
| B | VAL454 |
| B | PHE458 |
| B | PTY1105 |
| site_id | AF8 |
| Number of Residues | 2 |
| Details | binding site for residue PTY A 1107 |
| Chain | Residue |
| A | TRP895 |
| C | PTY1105 |
| site_id | AF9 |
| Number of Residues | 4 |
| Details | binding site for residue PTY A 1108 |
| Chain | Residue |
| A | ALA385 |
| A | PHE386 |
| A | PTY1111 |
| B | PTY1108 |
| site_id | AG1 |
| Number of Residues | 6 |
| Details | binding site for residue PTY A 1109 |
| Chain | Residue |
| A | GLN439 |
| A | SER450 |
| A | VAL482 |
| A | PTY1102 |
| A | PTY1103 |
| B | PTY1104 |
| site_id | AG2 |
| Number of Residues | 6 |
| Details | binding site for residue PTY A 1110 |
| Chain | Residue |
| A | ALA457 |
| A | PHE458 |
| A | ARG468 |
| A | ILE472 |
| A | VAL475 |
| C | PTY1109 |
| site_id | AG3 |
| Number of Residues | 2 |
| Details | binding site for residue PTY A 1111 |
| Chain | Residue |
| A | PTY1108 |
| B | PTY1108 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 462 |
| Details | TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:15919996 |
| Chain | Residue | Details |
| B | MET1-PRO9 | |
| C | GLU414-ILE438 | |
| C | ALA491-THR538 | |
| C | ALA889-PRO898 | |
| C | LEU944-LEU972 | |
| C | ILE1019-HIS1049 | |
| A | MET1-PRO9 | |
| A | LEU357-THR365 | |
| A | GLU414-ILE438 | |
| A | ALA491-THR538 | |
| A | ALA889-PRO898 | |
| B | LEU357-THR365 | |
| A | LEU944-LEU972 | |
| A | ILE1019-HIS1049 | |
| B | GLU414-ILE438 | |
| B | ALA491-THR538 | |
| B | ALA889-PRO898 | |
| B | LEU944-LEU972 | |
| B | ILE1019-HIS1049 | |
| C | MET1-PRO9 | |
| C | LEU357-THR365 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 54 |
| Details | TRANSMEM: Helical; Name=1 |
| Chain | Residue | Details |
| B | ILE10-LEU28 | |
| C | ILE10-LEU28 | |
| A | ILE10-LEU28 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1932 |
| Details | TOPO_DOM: Periplasmic => ECO:0000269|PubMed:15919996 |
| Chain | Residue | Details |
| B | LYS29-SER336 | |
| C | PHE556-ASN871 | |
| C | ARG919-ASP924 | |
| C | THR993-GLY998 | |
| A | LYS29-SER336 | |
| A | PHE386-ASN391 | |
| A | PHE458-ALA465 | |
| A | PHE556-ASN871 | |
| A | ARG919-ASP924 | |
| A | THR993-GLY998 | |
| B | PHE386-ASN391 | |
| B | PHE458-ALA465 | |
| B | PHE556-ASN871 | |
| B | ARG919-ASP924 | |
| B | THR993-GLY998 | |
| C | LYS29-SER336 | |
| C | PHE386-ASN391 | |
| C | PHE458-ALA465 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 57 |
| Details | TRANSMEM: Helical; Name=2 |
| Chain | Residue | Details |
| B | ILE337-TYR356 | |
| C | ILE337-TYR356 | |
| A | ILE337-TYR356 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 57 |
| Details | TRANSMEM: Helical; Name=3 |
| Chain | Residue | Details |
| B | LEU366-ALA385 | |
| C | LEU366-ALA385 | |
| A | LEU366-ALA385 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 63 |
| Details | TRANSMEM: Helical; Name=4 |
| Chain | Residue | Details |
| B | THR392-VAL413 | |
| C | THR392-VAL413 | |
| A | THR392-VAL413 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 54 |
| Details | TRANSMEM: Helical; Name=5 |
| Chain | Residue | Details |
| B | GLN439-ALA457 | |
| C | GLN439-ALA457 | |
| A | GLN439-ALA457 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 72 |
| Details | TRANSMEM: Helical; Name=6 |
| Chain | Residue | Details |
| B | ILE466-PRO490 | |
| C | ILE466-PRO490 | |
| A | ILE466-PRO490 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 48 |
| Details | TRANSMEM: Helical; Name=7 |
| Chain | Residue | Details |
| B | GLY539-LEU555 | |
| C | GLY539-LEU555 | |
| A | GLY539-LEU555 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 48 |
| Details | TRANSMEM: Helical; Name=8 |
| Chain | Residue | Details |
| B | GLN872-LEU888 | |
| C | GLN872-LEU888 | |
| A | GLN872-LEU888 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 57 |
| Details | TRANSMEM: Helical; Name=9 |
| Chain | Residue | Details |
| B | PHE899-PHE918 | |
| C | PHE899-PHE918 | |
| A | PHE899-PHE918 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 54 |
| Details | TRANSMEM: Helical; Name=10 |
| Chain | Residue | Details |
| B | VAL925-ILE943 | |
| C | VAL925-ILE943 | |
| A | VAL925-ILE943 |
| site_id | SWS_FT_FI13 |
| Number of Residues | 57 |
| Details | TRANSMEM: Helical; Name=11 |
| Chain | Residue | Details |
| B | ARG973-SER992 | |
| C | ARG973-SER992 | |
| A | ARG973-SER992 |
| site_id | SWS_FT_FI14 |
| Number of Residues | 57 |
| Details | TRANSMEM: Helical; Name=12 |
| Chain | Residue | Details |
| B | ALA999-ALA1018 | |
| C | ALA999-ALA1018 | |
| A | ALA999-ALA1018 |
