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6B7B

Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with 5-methoxy-2-methyl-1H-indole

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004595molecular_functionpantetheine-phosphate adenylyltransferase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0009058biological_processbiosynthetic process
A0015937biological_processcoenzyme A biosynthetic process
A0016779molecular_functionnucleotidyltransferase activity
A0042802molecular_functionidentical protein binding
B0003824molecular_functioncatalytic activity
B0004595molecular_functionpantetheine-phosphate adenylyltransferase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0009058biological_processbiosynthetic process
B0015937biological_processcoenzyme A biosynthetic process
B0016779molecular_functionnucleotidyltransferase activity
B0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue CWJ A 201
ChainResidue
AGLY9
AALA37
AMET74
AARG88
AGLU99
ALEU102
AASN106
ADMS204

site_idAC2
Number of Residues7
Detailsbinding site for residue SO4 A 202
ChainResidue
ALYS122
AHOH301
AHOH334
AHOH349
BHIS104
BARG107
ASER121

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 203
ChainResidue
AHIS18
AARG91
ASER128
ASER129
AHOH314
AHOH320
AHOH353

site_idAC4
Number of Residues5
Detailsbinding site for residue DMS A 204
ChainResidue
ALEU73
AASN106
ACWJ201
AHOH346
AHOH360

site_idAC5
Number of Residues13
Detailsbinding site for residue CWJ B 201
ChainResidue
BPRO8
BALA37
BPHE70
BSER71
BASP72
BLEU73
BMET74
BLEU102
BMET105
BASN106
BGLU134
BHIS138
BHOH308

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 B 202
ChainResidue
AHIS104
AARG107
BSER121
BLYS122
BHOH313
BHOH322

site_idAC7
Number of Residues7
Detailsbinding site for residue SO4 B 203
ChainResidue
BSER39
BPRO40
BSER41
BARG137
BHIS138
BHOH308
BHOH389

site_idAC8
Number of Residues10
Detailsbinding site for residue POP B 204
ChainResidue
BTHR10
BPHE11
BHIS18
BARG88
BARG91
BSER129
BHOH303
BHOH316
BHOH323
BHOH353

site_idAC9
Number of Residues6
Detailsbinding site for residue DMS B 205
ChainResidue
AMET1
BTHR26
BGLN27
BMET28
BPHE29
BASP30

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:11812124, ECO:0007744|PDB:1GN8
ChainResidueDetails
ATYR7
BTRP124
AHIS18
AGLY89
AGLU99
ATRP124
BTYR7
BHIS18
BGLY89
BGLU99

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:11812124, ECO:0000269|PubMed:12837781, ECO:0007744|PDB:1H1T, ECO:0007744|PDB:1QJC
ChainResidueDetails
ATHR10
ALYS42
AMET74
BTHR10
BLYS42
BMET74

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:11812124, ECO:0007744|PDB:1QJC
ChainResidueDetails
AARG88
BARG88

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000305|PubMed:11812124
ChainResidueDetails
AHIS18
BHIS18

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 299
ChainResidueDetails
AHIS18electrostatic stabiliser, hydrogen bond donor
ALYS42attractive charge-charge interaction, electrostatic stabiliser
AARG91attractive charge-charge interaction, electrostatic stabiliser
ASER129electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues4
DetailsM-CSA 299
ChainResidueDetails
BHIS18electrostatic stabiliser, hydrogen bond donor
BLYS42attractive charge-charge interaction, electrostatic stabiliser
BARG91attractive charge-charge interaction, electrostatic stabiliser
BSER129electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2024-09-04

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