Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6B55

Crystal structure of the Plant Defensin NaD1 complexed with phosphatidic acid

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006952	biological_process	defense response
B	0006952	biological_process	defense response
C	0006952	biological_process	defense response
D	0006952	biological_process	defense response
E	0006952	biological_process	defense response
F	0006952	biological_process	defense response
G	0006952	biological_process	defense response
H	0006952	biological_process	defense response
I	0006952	biological_process	defense response
J	0006952	biological_process	defense response
K	0006952	biological_process	defense response
L	0006952	biological_process	defense response
M	0006952	biological_process	defense response
N	0006952	biological_process	defense response
O	0006952	biological_process	defense response
P	0006952	biological_process	defense response
Q	0006952	biological_process	defense response
R	0006952	biological_process	defense response
S	0006952	biological_process	defense response
T	0006952	biological_process	defense response

Functional Information from PDB Data

site_id	AC1
Number of Residues	12
Details	binding site for residue PA8 A 101

Chain	Residue
A	SER35
H	LYS36
H	ARG39
Q	PA8101
A	ILE37
A	LEU38
A	ARG40
A	HOH218
B	LYS4
B	HIS33
B	LYS36
B	PA8101

site_id	AC2
Number of Residues	10
Details	binding site for residue PA8 B 101

Chain	Residue
A	PA8101
B	SER35
B	LYS36
B	ILE37
B	LEU38
B	ARG40
D	LYS36
D	ARG39
D	HOH201
R	PA8101

site_id	AC3
Number of Residues	2
Details	binding site for residue PO4 B 102

Chain	Residue
B	LYS36
B	ARG39

site_id	AC4
Number of Residues	11
Details	binding site for residue PA8 C 101

Chain	Residue
A	LYS36
A	ARG39
C	SER35
C	ILE37
C	LEU38
C	ARG40
C	HOH209
D	PA8101
E	PA8101
Q	PA8101
R	PA8101

site_id	AC5
Number of Residues	12
Details	binding site for residue PA8 D 101

Chain	Residue
A	ILE37
A	HOH214
C	PA8101
D	SER35
D	LYS36
D	ILE37
D	LEU38
D	ARG40
F	LYS36
F	ILE37
M	ILE13
T	PA8101

site_id	AC6
Number of Residues	17
Details	binding site for residue PA8 E 101

Chain	Residue
C	ILE13
C	LYS36
C	ILE37
C	ARG39
C	PA8101
E	SER35
E	ILE37
E	LEU38
E	ARG40
E	HOH201
F	ILE37
P	PA8101
R	ILE15
R	LEU38
R	ARG39
T	ILE13
T	LEU38

site_id	AC7
Number of Residues	10
Details	binding site for residue PGE E 102

Chain	Residue
C	LYS17
C	PRO18
C	ARG21
C	HOH210
E	THR5
E	GLU6
E	SER7
E	ASN8
F	ARG1
F	GLU2

site_id	AC8
Number of Residues	6
Details	binding site for residue PO4 G 101

Chain	Residue
G	SER35
G	LYS36
G	ILE37
G	LEU38
G	HOH204
J	LYS36

site_id	AC9
Number of Residues	2
Details	binding site for residue PO4 G 102

Chain	Residue
B	LYS36
G	ARG40

site_id	AD1
Number of Residues	1
Details	binding site for residue EDO G 103

Chain	Residue
I	PA8101

site_id	AD2
Number of Residues	6
Details	binding site for residue PA8 H 101

Chain	Residue
H	SER35
H	ILE37
H	LEU38
H	ARG40
H	HOH207
H	HOH216

site_id	AD3
Number of Residues	11
Details	binding site for residue PA8 I 101

Chain	Residue
J	PGE101
G	LYS36
G	ILE37
G	ARG39
G	EDO103
I	SER35
I	ILE37
I	LEU38
I	ARG40
I	HOH203
J	ILE37

site_id	AD4
Number of Residues	3
Details	binding site for residue PGE I 102

Chain	Residue
B	ILE37
I	ILE37
I	PGE103

site_id	AD5
Number of Residues	2
Details	binding site for residue PGE I 103

Chain	Residue
I	ARG39
I	PGE102

site_id	AD6
Number of Residues	4
Details	binding site for residue PGE J 101

Chain	Residue
I	ILE37
I	PA8101
J	HOH211
L	LYS36

site_id	AD7
Number of Residues	13
Details	binding site for residue PA8 L 101

Chain	Residue
I	LYS36
K	ILE37
K	LEU38
L	SER35
L	ILE37
L	LEU38
L	ARG40
L	HOH202
N	LYS36
N	ILE37
N	ARG39
N	HOH108
N	HOH109

site_id	AD8
Number of Residues	1
Details	binding site for residue EDO L 102

Chain	Residue
L	ARG39

site_id	AD9
Number of Residues	11
Details	binding site for residue PA8 M 101

Chain	Residue
K	LYS36
K	ILE37
K	ARG39
K	HOH111
M	SER35
M	ILE37
M	LEU38
M	ARG40
M	HOH201
M	HOH208
N	ILE37

site_id	AE1
Number of Residues	3
Details	binding site for residue PGE M 102

Chain	Residue
K	ILE15
M	ILE37
M	LEU38

site_id	AE2
Number of Residues	3
Details	binding site for residue EDO O 101

Chain	Residue
O	GLU2
O	THR30
O	PRO46

site_id	AE3
Number of Residues	13
Details	binding site for residue PA8 P 101

Chain	Residue
A	ILE13
A	ILE15
A	ARG39
C	ILE37
E	PA8101
O	ILE37
P	SER35
P	ILE37
P	LEU38
P	ARG40
P	HOH201
R	LYS36
R	ILE37

site_id	AE4
Number of Residues	14
Details	binding site for residue PA8 Q 101

Chain	Residue
A	LEU38
A	PA8101
C	PA8101
H	ARG39
J	ILE15
O	LYS36
O	ILE37
O	ARG39
Q	SER35
Q	ILE37
Q	LEU38
Q	ARG40
Q	HOH209
R	PA8101

site_id	AE5
Number of Residues	2
Details	binding site for residue EDO Q 102

Chain	Residue
Q	ARG21
Q	ILE25

site_id	AE6
Number of Residues	13
Details	binding site for residue PA8 R 101

Chain	Residue
B	PA8101
C	PA8101
Q	ILE37
Q	PA8101
R	SER35
R	ILE37
R	LEU38
R	ARG40
S	PA8101
T	LYS36
T	ILE37
T	ARG39
T	HOH212

site_id	AE7
Number of Residues	11
Details	binding site for residue PA8 S 101

Chain	Residue
J	ILE15
Q	LYS36
Q	ILE37
Q	HOH202
R	PA8101
S	SER35
S	ILE37
S	LEU38
S	ARG40
S	HOH209
T	PA8101

site_id	AE8
Number of Residues	8
Details	binding site for residue PA8 T 101

Chain	Residue
D	PA8101
M	LYS36
M	ILE37
S	PA8101
T	SER35
T	ILE37
T	LEU38
T	ARG40

site_id	AE9
Number of Residues	5
Details	binding site for residue EDO T 102

Chain	Residue
T	ARG1
T	GLU2
T	THR30
T	LYS45
T	PRO46

Functional Information from PROSITE/UniProt

site_id	PS00940
Number of Residues	24
Details	GAMMA_THIONIN Gamma-thionins family signature. ReCkteSntFp.GiCitkppCrkaC

Chain	Residue	Details
A	ARG1-CYS24

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)