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6AWB

Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
010003677molecular_functionDNA binding
010003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
010006351biological_processDNA-templated transcription
010046983molecular_functionprotein dimerization activity
020003677molecular_functionDNA binding
020003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
020006351biological_processDNA-templated transcription
020046983molecular_functionprotein dimerization activity
030000345cellular_componentcytosolic DNA-directed RNA polymerase complex
030000428cellular_componentDNA-directed RNA polymerase complex
030003677molecular_functionDNA binding
030003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
030005515molecular_functionprotein binding
030005737cellular_componentcytoplasm
030005829cellular_componentcytosol
030006351biological_processDNA-templated transcription
030006352biological_processDNA-templated transcription initiation
030006879biological_processintracellular iron ion homeostasis
030008023cellular_componenttranscription elongation factor complex
030009408biological_processresponse to heat
030016020cellular_componentmembrane
030016779molecular_functionnucleotidyltransferase activity
030031564biological_processtranscription antitermination
030032549molecular_functionribonucleoside binding
030032784biological_processregulation of DNA-templated transcription elongation
030034062molecular_function5'-3' RNA polymerase activity
030036460biological_processcellular response to cell envelope stress
030042128biological_processnitrate assimilation
030044780biological_processbacterial-type flagellum assembly
030046677biological_processresponse to antibiotic
030048870biological_processcell motility
030071973biological_processbacterial-type flagellum-dependent cell motility
030090605biological_processsubmerged biofilm formation
032000142biological_processregulation of DNA-templated transcription initiation
040000287molecular_functionmagnesium ion binding
040000345cellular_componentcytosolic DNA-directed RNA polymerase complex
040000428cellular_componentDNA-directed RNA polymerase complex
040003677molecular_functionDNA binding
040003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
040005515molecular_functionprotein binding
040005737cellular_componentcytoplasm
040005829cellular_componentcytosol
040006351biological_processDNA-templated transcription
040006352biological_processDNA-templated transcription initiation
040006879biological_processintracellular iron ion homeostasis
040008023cellular_componenttranscription elongation factor complex
040008270molecular_functionzinc ion binding
040009408biological_processresponse to heat
040016020cellular_componentmembrane
040016779molecular_functionnucleotidyltransferase activity
040031564biological_processtranscription antitermination
040032784biological_processregulation of DNA-templated transcription elongation
040034062molecular_function5'-3' RNA polymerase activity
040036460biological_processcellular response to cell envelope stress
040042128biological_processnitrate assimilation
040044780biological_processbacterial-type flagellum assembly
040046677biological_processresponse to antibiotic
040046872molecular_functionmetal ion binding
040048870biological_processcell motility
040071973biological_processbacterial-type flagellum-dependent cell motility
040090605biological_processsubmerged biofilm formation
042000142biological_processregulation of DNA-templated transcription initiation
050003677molecular_functionDNA binding
050003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
050006351biological_processDNA-templated transcription
E0000028biological_processribosomal small subunit assembly
E0002181biological_processcytoplasmic translation
E0003735molecular_functionstructural constituent of ribosome
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0008270molecular_functionzinc ion binding
E0015935cellular_componentsmall ribosomal subunit
E0022627cellular_componentcytosolic small ribosomal subunit
E1990904cellular_componentribonucleoprotein complex
F0003676molecular_functionnucleic acid binding
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0006412biological_processtranslation
G0000028biological_processribosomal small subunit assembly
G0000900molecular_functionmRNA regulatory element binding translation repressor activity
G0002181biological_processcytoplasmic translation
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005840cellular_componentribosome
G0006353biological_processDNA-templated transcription termination
G0006412biological_processtranslation
G0006417biological_processregulation of translation
G0015935cellular_componentsmall ribosomal subunit
G0019843molecular_functionrRNA binding
G0022627cellular_componentcytosolic small ribosomal subunit
G0031564biological_processtranscription antitermination
G0042254biological_processribosome biogenesis
G0042274biological_processribosomal small subunit biogenesis
G0045947biological_processnegative regulation of translational initiation
G0046677biological_processresponse to antibiotic
G0048027molecular_functionmRNA 5'-UTR binding
G1990145biological_processmaintenance of translational fidelity
G1990904cellular_componentribonucleoprotein complex
H0000028biological_processribosomal small subunit assembly
H0002181biological_processcytoplasmic translation
H0003723molecular_functionRNA binding
H0003735molecular_functionstructural constituent of ribosome
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0015935cellular_componentsmall ribosomal subunit
H0019843molecular_functionrRNA binding
H0022627cellular_componentcytosolic small ribosomal subunit
H0043229cellular_componentintracellular organelle
H0046677biological_processresponse to antibiotic
H1990145biological_processmaintenance of translational fidelity
H1990904cellular_componentribonucleoprotein complex
I0003735molecular_functionstructural constituent of ribosome
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0019843molecular_functionrRNA binding
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0006412biological_processtranslation
J0015935cellular_componentsmall ribosomal subunit
K0000028biological_processribosomal small subunit assembly
K0002181biological_processcytoplasmic translation
K0003735molecular_functionstructural constituent of ribosome
K0005737cellular_componentcytoplasm
K0005829cellular_componentcytosol
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0006417biological_processregulation of translation
K0019843molecular_functionrRNA binding
K0022627cellular_componentcytosolic small ribosomal subunit
K0043229cellular_componentintracellular organelle
K0043488biological_processregulation of mRNA stability
K1990904cellular_componentribonucleoprotein complex
L0000049molecular_functiontRNA binding
L0002181biological_processcytoplasmic translation
L0003723molecular_functionRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005737cellular_componentcytoplasm
L0005829cellular_componentcytosol
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0022627cellular_componentcytosolic small ribosomal subunit
L0043232cellular_componentintracellular non-membrane-bounded organelle
L1990904cellular_componentribonucleoprotein complex
M0000049molecular_functiontRNA binding
M0001072molecular_functiontranscription antitermination factor activity, RNA binding
M0002181biological_processcytoplasmic translation
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005515molecular_functionprotein binding
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0008023cellular_componenttranscription elongation factor complex
M0015935cellular_componentsmall ribosomal subunit
M0022627cellular_componentcytosolic small ribosomal subunit
M0031564biological_processtranscription antitermination
M0032784biological_processregulation of DNA-templated transcription elongation
M0042254biological_processribosome biogenesis
M1990904cellular_componentribonucleoprotein complex
N0002181biological_processcytoplasmic translation
N0003735molecular_functionstructural constituent of ribosome
N0005515molecular_functionprotein binding
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0019843molecular_functionrRNA binding
N0022627cellular_componentcytosolic small ribosomal subunit
N0070181molecular_functionsmall ribosomal subunit rRNA binding
N1990904cellular_componentribonucleoprotein complex
O0000049molecular_functiontRNA binding
O0000372biological_processGroup I intron splicing
O0002181biological_processcytoplasmic translation
O0003735molecular_functionstructural constituent of ribosome
O0005515molecular_functionprotein binding
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0015935cellular_componentsmall ribosomal subunit
O0019843molecular_functionrRNA binding
O0022627cellular_componentcytosolic small ribosomal subunit
O0033120biological_processpositive regulation of RNA splicing
O0034336molecular_functionmisfolded RNA binding
O0034337biological_processRNA folding
O0046677biological_processresponse to antibiotic
O1990145biological_processmaintenance of translational fidelity
O1990904cellular_componentribonucleoprotein complex
P0000049molecular_functiontRNA binding
P0002181biological_processcytoplasmic translation
P0003676molecular_functionnucleic acid binding
P0003723molecular_functionRNA binding
P0003735molecular_functionstructural constituent of ribosome
P0005515molecular_functionprotein binding
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015935cellular_componentsmall ribosomal subunit
P0019843molecular_functionrRNA binding
P0022627cellular_componentcytosolic small ribosomal subunit
P1990904cellular_componentribonucleoprotein complex
Q0000028biological_processribosomal small subunit assembly
Q0000049molecular_functiontRNA binding
Q0002181biological_processcytoplasmic translation
Q0003735molecular_functionstructural constituent of ribosome
Q0005737cellular_componentcytoplasm
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0015935cellular_componentsmall ribosomal subunit
Q0019843molecular_functionrRNA binding
Q0022627cellular_componentcytosolic small ribosomal subunit
Q0043229cellular_componentintracellular organelle
Q1990904cellular_componentribonucleoprotein complex
R0000028biological_processribosomal small subunit assembly
R0002181biological_processcytoplasmic translation
R0003735molecular_functionstructural constituent of ribosome
R0005737cellular_componentcytoplasm
R0005829cellular_componentcytosol
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0006417biological_processregulation of translation
R0019843molecular_functionrRNA binding
R0022627cellular_componentcytosolic small ribosomal subunit
R0043229cellular_componentintracellular organelle
R0070181molecular_functionsmall ribosomal subunit rRNA binding
R1990904cellular_componentribonucleoprotein complex
S0000028biological_processribosomal small subunit assembly
S0000400molecular_functionfour-way junction DNA binding
S0002181biological_processcytoplasmic translation
S0003735molecular_functionstructural constituent of ribosome
S0004519molecular_functionendonuclease activity
S0004520molecular_functionDNA endonuclease activity
S0005737cellular_componentcytoplasm
S0005840cellular_componentribosome
S0006259biological_processDNA metabolic process
S0006412biological_processtranslation
S0015935cellular_componentsmall ribosomal subunit
S0022627cellular_componentcytosolic small ribosomal subunit
S0043229cellular_componentintracellular organelle
S1990904cellular_componentribonucleoprotein complex
T0000028biological_processribosomal small subunit assembly
T0002181biological_processcytoplasmic translation
T0003735molecular_functionstructural constituent of ribosome
T0005737cellular_componentcytoplasm
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0008270molecular_functionzinc ion binding
T0019843molecular_functionrRNA binding
T0022627cellular_componentcytosolic small ribosomal subunit
T0046677biological_processresponse to antibiotic
T0060090molecular_functionmolecular adaptor activity
T0070181molecular_functionsmall ribosomal subunit rRNA binding
T1990904cellular_componentribonucleoprotein complex
U0003735molecular_functionstructural constituent of ribosome
U0005840cellular_componentribosome
U0006412biological_processtranslation
V0003723molecular_functionRNA binding
V0003735molecular_functionstructural constituent of ribosome
V0005840cellular_componentribosome
V0006412biological_processtranslation
V0015935cellular_componentsmall ribosomal subunit
W0000028biological_processribosomal small subunit assembly
W0002181biological_processcytoplasmic translation
W0003723molecular_functionRNA binding
W0003735molecular_functionstructural constituent of ribosome
W0005737cellular_componentcytoplasm
W0005829cellular_componentcytosol
W0005840cellular_componentribosome
W0006412biological_processtranslation
W0008073molecular_functionornithine decarboxylase inhibitor activity
W0015935cellular_componentsmall ribosomal subunit
W0019843molecular_functionrRNA binding
W0022627cellular_componentcytosolic small ribosomal subunit
W0070181molecular_functionsmall ribosomal subunit rRNA binding
W1990904cellular_componentribonucleoprotein complex
X0000028biological_processribosomal small subunit assembly
X0002181biological_processcytoplasmic translation
X0003735molecular_functionstructural constituent of ribosome
X0005737cellular_componentcytoplasm
X0005829cellular_componentcytosol
X0005840cellular_componentribosome
X0006412biological_processtranslation
X0019843molecular_functionrRNA binding
X0022627cellular_componentcytosolic small ribosomal subunit
X1990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV
ChainResidueDetails
GLEU93-VAL117

site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV
ChainResidueDetails
03GLY1063-VAL1075

site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN
ChainResidueDetails
IGLY43-ASN52

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
OLYS42-ARG49

site_idPS00732
Number of Residues10
DetailsRIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA
ChainResidueDetails
SVAL2-ALA11

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY
ChainResidueDetails
RLEU38-TYR68

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR
ChainResidueDetails
KGLY99-ARG116

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT
ChainResidueDetails
MALA29-THR44

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI
ChainResidueDetails
HGLY27-ILE59

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR
ChainResidueDetails
QARG62-ARG84

site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG
ChainResidueDetails
PPRO9-GLY37

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ
ChainResidueDetails
PARG86-GLN99

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS
ChainResidueDetails
TGLY55-SER67

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN
ChainResidueDetails
NILE96-ASN118

site_idPS01181
Number of Residues13
DetailsRIBOSOMAL_S21 Ribosomal protein S21 signature. DvALRRFKRsceK
ChainResidueDetails
XASP13-LYS25

site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDadhEhiaIkEannlGIP
ChainResidueDetails
EPRO158-PRO182

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA
ChainResidueDetails
JSER19-ALA45

site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG
ChainResidueDetails
FALA162-GLY196

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT
ChainResidueDetails
VASN52-THR76

site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI
ChainResidueDetails
UILE21-ILE44

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL
ChainResidueDetails
LGLY68-LEU86

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: 3-methylthioaspartic acid => ECO:0000269|PubMed:8844851
ChainResidueDetails
04ASP460
04ASP462
04ASP464
04CYS814
04CYS888
04CYS895
04CYS898
OASP88
04CYS72
04CYS85
04CYS88

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842
ChainResidueDetails
OLYS107

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000255|HAMAP-Rule:MF_01322, ECO:0000269|PubMed:18723842
ChainResidueDetails
04LYS983

218853

PDB entries from 2024-04-24

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