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6AVI

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and Nonanoic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004879molecular_functionnuclear receptor activity
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
B0003677molecular_functionDNA binding
B0004879molecular_functionnuclear receptor activity
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue GW9 A 501
ChainResidue
APHE282
AHOH621
ACYS285
AARG288
ASER289
APHE363
AHIS449
ALEU453
ATYR473
AKNA502

site_idAC2
Number of Residues7
Detailsbinding site for residue KNA A 502
ChainResidue
ACYS285
AARG288
AILE341
ASER342
AGLU343
AMET364
AGW9501

site_idAC3
Number of Residues7
Detailsbinding site for residue KNA B 502
ChainResidue
BGLY284
BCYS285
BILE341
BSER342
BMET364
BKNA503
BHOH679

site_idAC4
Number of Residues8
Detailsbinding site for residue KNA B 503
ChainResidue
BGLY284
BPHE287
BARG288
BGLU291
BSER342
BGLU343
BKNA502
BHOH670

site_idAC5
Number of Residues10
Detailsbinding site for Di-peptide GLU B 276 and ARG B 357
ChainResidue
BLYS275
BVAL277
BALA278
BILE279
BARG280
BLEU356
BLYS358
BPRO359
BPHE360
BGLY361

site_idAC6
Number of Residues16
Detailsbinding site for Di-peptide GW9 B 501 and CYS B 285
ChainResidue
BILE281
BPHE282
BGLN283
BGLY284
BGLN286
BPHE287
BARG288
BSER289
BHIS323
BILE326
BTYR327
BLEU330
BPHE363
BHIS449
BLEU453
BKNA502

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsMotif: {"description":"9aaTAD","evidences":[{"source":"PubMed","id":"30468856","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"9744270","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2PRG","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"36737649","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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