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6ABM

Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0005524molecular_functionATP binding
A0043039biological_processtRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 501
ChainResidue
AATP504
AHOH645
AHOH669
AHOH744
AHOH778

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AHOH648
AHOH772
AGLU396
ASER399
AMG503
AATP504

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 503
ChainResidue
AGLU396
AMG502
AATP504
AHOH648
AHOH803
AHOH815

site_idAC4
Number of Residues27
Detailsbinding site for residue ATP A 504
ChainResidue
AARG330
AGLU332
AHIS338
ALEU339
APHE342
AMET344
AGLU396
ALEU397
ASER398
ASER399
AGLY421
AGLY423
AARG426
AMG501
AMG502
AMG503
A9VR505
AHOH645
AHOH648
AHOH669
AHOH705
AHOH707
AHOH744
AHOH745
AHOH772
AHOH778
AHOH815

site_idAC5
Number of Residues15
Detailsbinding site for residue 9VR A 505
ChainResidue
AMET276
AALA302
AALA306
AASN346
ACYS348
APHE384
ASER399
ALEU407
AASP408
ATRP411
ATRP417
AGLY419
AALA420
AATP504
AHOH817

site_idAC6
Number of Residues5
Detailsbinding site for residue K A 506
ChainResidue
APRO204
AASP206
AHOH714
AHOH863
AHOH866

site_idAC7
Number of Residues3
Detailsbinding site for residue K A 507
ChainResidue
AGLU341
AARG442
AHOH721

site_idAC8
Number of Residues4
Detailsbinding site for residue K A 508
ChainResidue
AASN368
AILE372
AHOH623
AHOH828

218500

PDB entries from 2024-04-17

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