5ZW9
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005829 | cellular_component | cytosol |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008478 | molecular_function | pyridoxal kinase activity |
A | 0008902 | molecular_function | hydroxymethylpyrimidine kinase activity |
A | 0009443 | biological_process | pyridoxal 5'-phosphate salvage |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0042816 | biological_process | vitamin B6 metabolic process |
A | 0046872 | molecular_function | metal ion binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005829 | cellular_component | cytosol |
B | 0008270 | molecular_function | zinc ion binding |
B | 0008478 | molecular_function | pyridoxal kinase activity |
B | 0008902 | molecular_function | hydroxymethylpyrimidine kinase activity |
B | 0009443 | biological_process | pyridoxal 5'-phosphate salvage |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0042816 | biological_process | vitamin B6 metabolic process |
B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue PO4 A 301 |
Chain | Residue |
A | LYS233 |
A | GLY234 |
A | THR235 |
A | GLY236 |
A | ASP237 |
A | MG302 |
A | HOH409 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue MG A 302 |
Chain | Residue |
A | PO4301 |
A | HOH476 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue EDO A 303 |
Chain | Residue |
A | GLU180 |
A | VAL220 |
B | PE4303 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue PEG A 304 |
Chain | Residue |
A | ALA224 |
A | HOH403 |
A | HOH446 |
A | HOH462 |
B | PE4303 |
site_id | AC5 |
Number of Residues | 1 |
Details | binding site for residue EDO B 301 |
Chain | Residue |
B | GLU76 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue EDO B 302 |
Chain | Residue |
B | VAL132 |
B | TYR141 |
B | GLY234 |
B | THR235 |
B | GLY236 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residue PE4 B 303 |
Chain | Residue |
A | LYS66 |
A | ALA224 |
A | EDO303 |
A | PEG304 |
B | GLN47 |
B | LYS251 |
B | GLN262 |
B | HOH468 |