5ZW9
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005829 | cellular_component | cytosol |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0008478 | molecular_function | pyridoxal kinase activity |
| A | 0008902 | molecular_function | hydroxymethylpyrimidine kinase activity |
| A | 0009443 | biological_process | pyridoxal 5'-phosphate salvage |
| A | 0016301 | molecular_function | kinase activity |
| A | 0042816 | biological_process | vitamin B6 metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005829 | cellular_component | cytosol |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0008478 | molecular_function | pyridoxal kinase activity |
| B | 0008902 | molecular_function | hydroxymethylpyrimidine kinase activity |
| B | 0009443 | biological_process | pyridoxal 5'-phosphate salvage |
| B | 0016301 | molecular_function | kinase activity |
| B | 0042816 | biological_process | vitamin B6 metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 7 |
| Details | binding site for residue PO4 A 301 |
| Chain | Residue |
| A | LYS233 |
| A | GLY234 |
| A | THR235 |
| A | GLY236 |
| A | ASP237 |
| A | MG302 |
| A | HOH409 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue MG A 302 |
| Chain | Residue |
| A | PO4301 |
| A | HOH476 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue EDO A 303 |
| Chain | Residue |
| A | GLU180 |
| A | VAL220 |
| B | PE4303 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue PEG A 304 |
| Chain | Residue |
| A | ALA224 |
| A | HOH403 |
| A | HOH446 |
| A | HOH462 |
| B | PE4303 |
| site_id | AC5 |
| Number of Residues | 1 |
| Details | binding site for residue EDO B 301 |
| Chain | Residue |
| B | GLU76 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue EDO B 302 |
| Chain | Residue |
| B | VAL132 |
| B | TYR141 |
| B | GLY234 |
| B | THR235 |
| B | GLY236 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue PE4 B 303 |
| Chain | Residue |
| A | LYS66 |
| A | ALA224 |
| A | EDO303 |
| A | PEG304 |
| B | GLN47 |
| B | LYS251 |
| B | GLN262 |
| B | HOH468 |
