Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5ZVT

Structure of RNA polymerase complex and genome within a dsRNA virus provides insights into the mechanisms of transcription and assembly

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0039624	cellular_component	viral outer capsid
A	0046718	biological_process	symbiont entry into host cell
A	0046812	molecular_function	host cell surface binding
B	0039624	cellular_component	viral outer capsid
B	0046718	biological_process	symbiont entry into host cell
B	0046812	molecular_function	host cell surface binding
C	0039624	cellular_component	viral outer capsid
C	0046718	biological_process	symbiont entry into host cell
C	0046812	molecular_function	host cell surface binding
D	0039624	cellular_component	viral outer capsid
D	0046718	biological_process	symbiont entry into host cell
D	0046812	molecular_function	host cell surface binding
E	0039624	cellular_component	viral outer capsid
E	0046718	biological_process	symbiont entry into host cell
E	0046812	molecular_function	host cell surface binding
F	0039624	cellular_component	viral outer capsid
F	0046718	biological_process	symbiont entry into host cell
F	0046812	molecular_function	host cell surface binding
G	0039624	cellular_component	viral outer capsid
G	0046718	biological_process	symbiont entry into host cell
G	0046812	molecular_function	host cell surface binding
H	0039624	cellular_component	viral outer capsid
H	0046718	biological_process	symbiont entry into host cell
H	0046812	molecular_function	host cell surface binding
I	0039624	cellular_component	viral outer capsid
I	0046718	biological_process	symbiont entry into host cell
I	0046812	molecular_function	host cell surface binding
J	0039624	cellular_component	viral outer capsid
J	0046718	biological_process	symbiont entry into host cell
J	0046812	molecular_function	host cell surface binding
K	0039624	cellular_component	viral outer capsid
K	0046718	biological_process	symbiont entry into host cell
K	0046812	molecular_function	host cell surface binding
L	0039624	cellular_component	viral outer capsid
L	0046718	biological_process	symbiont entry into host cell
L	0046812	molecular_function	host cell surface binding
M	0039624	cellular_component	viral outer capsid
M	0046718	biological_process	symbiont entry into host cell
M	0046812	molecular_function	host cell surface binding
N	0039624	cellular_component	viral outer capsid
N	0046718	biological_process	symbiont entry into host cell
N	0046812	molecular_function	host cell surface binding
O	0039624	cellular_component	viral outer capsid
O	0046718	biological_process	symbiont entry into host cell
O	0046812	molecular_function	host cell surface binding
P	0039624	cellular_component	viral outer capsid
P	0046718	biological_process	symbiont entry into host cell
P	0046812	molecular_function	host cell surface binding
Q	0039624	cellular_component	viral outer capsid
Q	0046718	biological_process	symbiont entry into host cell
Q	0046812	molecular_function	host cell surface binding
R	0039624	cellular_component	viral outer capsid
R	0046718	biological_process	symbiont entry into host cell
R	0046812	molecular_function	host cell surface binding
S	0039624	cellular_component	viral outer capsid
S	0046718	biological_process	symbiont entry into host cell
S	0046812	molecular_function	host cell surface binding
T	0039624	cellular_component	viral outer capsid
T	0046718	biological_process	symbiont entry into host cell
T	0046812	molecular_function	host cell surface binding
W	0004482	molecular_function	mRNA 5'-cap (guanine-N7-)-methyltransferase activity
W	0004484	molecular_function	mRNA guanylyltransferase activity
W	0005524	molecular_function	ATP binding
W	0006370	biological_process	7-methylguanosine mRNA capping
W	0019028	cellular_component	viral capsid
X	0003724	molecular_function	RNA helicase activity
X	0016787	molecular_function	hydrolase activity
Y	0003724	molecular_function	RNA helicase activity
Y	0016787	molecular_function	hydrolase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for Ligand THR F 395 bound to ASN f 61

Chain	Residue
F	VAL374
F	LEU375
F	ILE394
F	VAL396
F	VAL397
f	ASN61

site_id	AC2
Number of Residues	6
Details	binding site for Ligand THR H 395 bound to ASN h 61

Chain	Residue
H	VAL396
H	VAL397
h	ASN61
H	VAL374
H	LEU375
H	ILE394

site_id	AC3
Number of Residues	6
Details	binding site for Ligand THR L 395 bound to ASN l 61

Chain	Residue
L	VAL374
L	LEU375
L	ILE394
L	VAL396
L	VAL397
l	ASN61

site_id	AC4
Number of Residues	6
Details	binding site for Ligand THR N 395 bound to ASN n 61

Chain	Residue
N	VAL374
N	LEU375
N	ILE394
N	VAL396
N	VAL397
n	ASN61

site_id	AC5
Number of Residues	6
Details	binding site for Ligand THR R 395 bound to ASN r 61

Chain	Residue
R	VAL374
R	LEU375
R	ILE394
R	VAL396
R	VAL397
r	ASN61

site_id	AC6
Number of Residues	12
Details	binding site for Di-peptide MYR A 101 and GLY A 2

Chain	Residue
A	ASN3
A	VAL4
A	ILE13
A	THR14
B	LEU163
B	MET167
B	LEU187
B	LYS191
B	CYS200
B	PRO204
B	TYR208
B	ALA211

site_id	AC7
Number of Residues	12
Details	binding site for Di-peptide MYR C 101 and GLY C 2

Chain	Residue
C	ASN3
C	VAL4
C	ILE13
C	THR14
D	LEU163
D	MET167
D	LEU187
D	LYS191
D	CYS200
D	PRO204
D	TYR208
D	ALA211

site_id	AC8
Number of Residues	12
Details	binding site for Di-peptide MYR E 101 and GLY E 2

Chain	Residue
E	ASN3
E	VAL4
E	ILE13
E	THR14
F	LEU163
F	MET167
F	LEU187
F	LYS191
F	CYS200
F	PRO204
F	TYR208
F	ALA211

site_id	AC9
Number of Residues	12
Details	binding site for Di-peptide MYR G 101 and GLY G 2

Chain	Residue
G	ASN3
G	VAL4
G	ILE13
G	THR14
H	LEU163
H	MET167
H	LEU187
H	LYS191
H	CYS200
H	PRO204
H	TYR208
H	ALA211

site_id	AD1
Number of Residues	12
Details	binding site for Di-peptide MYR I 101 and GLY I 2

Chain	Residue
I	ASN3
I	VAL4
I	ILE13
I	THR14
J	LEU163
J	MET167
J	LEU187
J	LYS191
J	CYS200
J	PRO204
J	TYR208
J	ALA211

site_id	AD2
Number of Residues	12
Details	binding site for Di-peptide MYR K 101 and GLY K 2

Chain	Residue
L	PRO204
L	TYR208
L	ALA211
K	ASN3
K	VAL4
K	ILE13
K	THR14
L	LEU163
L	MET167
L	LEU187
L	LYS191
L	CYS200

site_id	AD3
Number of Residues	12
Details	binding site for Di-peptide MYR M 101 and GLY M 2

Chain	Residue
M	ASN3
M	VAL4
M	ILE13
M	THR14
N	LEU163
N	MET167
N	LEU187
N	LYS191
N	CYS200
N	PRO204
N	TYR208
N	ALA211

site_id	AD4
Number of Residues	12
Details	binding site for Di-peptide MYR O 101 and GLY O 2

Chain	Residue
O	ASN3
O	VAL4
O	ILE13
O	THR14
P	LEU163
P	MET167
P	LEU187
P	LYS191
P	CYS200
P	PRO204
P	TYR208
P	ALA211

site_id	AD5
Number of Residues	12
Details	binding site for Di-peptide MYR Q 101 and GLY Q 2

Chain	Residue
Q	ASN3
Q	VAL4
Q	ILE13
Q	THR14
R	LEU163
R	MET167
R	LEU187
R	LYS191
R	CYS200
R	PRO204
R	TYR208
R	ALA211

site_id	AD6
Number of Residues	12
Details	binding site for Di-peptide MYR S 101 and GLY S 2

Chain	Residue
S	ASN3
S	VAL4
S	ILE13
S	THR14
T	LEU163
T	MET167
T	LEU187
T	LYS191
T	CYS200
T	PRO204
T	TYR208
T	ALA211

Functional Information from PROSITE/UniProt

site_id	PS00028
Number of Residues	22
Details	ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cnv..CnarFstmsalseHlrsd.H

Chain	Residue	Details
X	CYS119-HIS140

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)