5ZTB
Structure of Sulfurtransferase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0002098 | biological_process | tRNA wobble uridine modification |
A | 0002143 | biological_process | tRNA wobble position uridine thiolation |
A | 0002144 | cellular_component | cytosolic tRNA wobble base thiouridylase complex |
A | 0005524 | molecular_function | ATP binding |
A | 0008033 | biological_process | tRNA processing |
A | 0016740 | molecular_function | transferase activity |
A | 0034227 | biological_process | tRNA thio-modification |
A | 0046872 | molecular_function | metal ion binding |
A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
B | 0000049 | molecular_function | tRNA binding |
B | 0002098 | biological_process | tRNA wobble uridine modification |
B | 0002143 | biological_process | tRNA wobble position uridine thiolation |
B | 0002144 | cellular_component | cytosolic tRNA wobble base thiouridylase complex |
B | 0005524 | molecular_function | ATP binding |
B | 0008033 | biological_process | tRNA processing |
B | 0016740 | molecular_function | transferase activity |
B | 0034227 | biological_process | tRNA thio-modification |
B | 0046872 | molecular_function | metal ion binding |
B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
C | 0000049 | molecular_function | tRNA binding |
C | 0002098 | biological_process | tRNA wobble uridine modification |
C | 0002143 | biological_process | tRNA wobble position uridine thiolation |
C | 0002144 | cellular_component | cytosolic tRNA wobble base thiouridylase complex |
C | 0005524 | molecular_function | ATP binding |
C | 0008033 | biological_process | tRNA processing |
C | 0016740 | molecular_function | transferase activity |
C | 0034227 | biological_process | tRNA thio-modification |
C | 0046872 | molecular_function | metal ion binding |
C | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
D | 0000166 | molecular_function | nucleotide binding |
D | 0008033 | biological_process | tRNA processing |
E | 0000166 | molecular_function | nucleotide binding |
E | 0008033 | biological_process | tRNA processing |
F | 0000166 | molecular_function | nucleotide binding |
F | 0008033 | biological_process | tRNA processing |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue GOL E 101 |
Chain | Residue |
B | ARG204 |
B | HOH547 |
E | PRO32 |
E | VAL35 |
E | VAL36 |
E | ALA37 |
E | LEU44 |
E | HOH201 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue SF4 B 401 |
Chain | Residue |
B | CYS133 |
B | CYS222 |
B | ASN224 |
E | GLY65 |
B | CYS130 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue ZN B 402 |
Chain | Residue |
B | CYS3 |
B | CYS6 |
B | CYS22 |
B | HIS25 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue ZN B 403 |
Chain | Residue |
B | CYS274 |
B | CYS277 |
B | CYS286 |
B | CYS289 |
site_id | AC5 |
Number of Residues | 17 |
Details | binding site for residue ATP B 404 |
Chain | Residue |
B | ALA53 |
B | VAL54 |
B | SER55 |
B | GLY57 |
B | LYS58 |
B | ASP59 |
B | SER60 |
B | LEU77 |
B | ILE79 |
B | LYS137 |
B | THR155 |
B | GLY156 |
B | HIS157 |
B | HOH503 |
B | HOH505 |
E | SER63 |
E | GLY65 |
site_id | AC6 |
Number of Residues | 1 |
Details | binding site for residue SO4 B 405 |
Chain | Residue |
B | HOH510 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 406 |
Chain | Residue |
B | ARG298 |
B | LYS301 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 407 |
Chain | Residue |
B | THR281 |
B | THR282 |
B | CYS286 |
B | ALA287 |
B | ARG290 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 408 |
Chain | Residue |
B | LYS137 |
B | HIS157 |
B | HOH504 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue SF4 A 401 |
Chain | Residue |
A | CYS130 |
A | CYS133 |
A | CYS222 |
A | ASN224 |
D | GLY65 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue ZN A 402 |
Chain | Residue |
A | CYS3 |
A | CYS6 |
A | CYS22 |
A | HIS25 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue ZN A 403 |
Chain | Residue |
A | CYS274 |
A | CYS277 |
A | CYS286 |
A | CYS289 |
site_id | AD4 |
Number of Residues | 14 |
Details | binding site for residue ATP A 404 |
Chain | Residue |
A | ALA53 |
A | VAL54 |
A | SER55 |
A | GLY57 |
A | LYS58 |
A | ASP59 |
A | SER60 |
A | LEU77 |
A | ILE79 |
A | LYS137 |
A | THR155 |
A | GLY156 |
A | HIS157 |
D | GLY65 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 405 |
Chain | Residue |
A | THR281 |
A | THR282 |
A | ALA287 |
A | ARG290 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue SF4 C 401 |
Chain | Residue |
C | CYS130 |
C | CYS133 |
C | CYS222 |
C | ASN224 |
F | GLY65 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue ZN C 402 |
Chain | Residue |
C | CYS3 |
C | CYS6 |
C | CYS22 |
C | HIS25 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue ZN C 403 |
Chain | Residue |
C | CYS274 |
C | CYS277 |
C | CYS286 |
C | CYS289 |
site_id | AD9 |
Number of Residues | 15 |
Details | binding site for residue ATP C 404 |
Chain | Residue |
C | SER60 |
C | LEU77 |
C | ILE79 |
C | LYS137 |
C | THR155 |
C | GLY156 |
C | HIS157 |
F | SER63 |
F | GLY65 |
C | ALA53 |
C | VAL54 |
C | SER55 |
C | GLY57 |
C | LYS58 |
C | ASP59 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 405 |
Chain | Residue |
C | THR281 |
C | THR282 |
C | CYS286 |
C | ALA287 |
C | ARG290 |
site_id | AE2 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 406 |
Chain | Residue |
C | ARG36 |
C | ARG40 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000269|PubMed:28439027, ECO:0007744|PDB:5B4E, ECO:0007744|PDB:5B4F, ECO:0007744|PDB:5GHA |
Chain | Residue | Details |
B | CYS3 | |
A | CYS6 | |
A | CYS22 | |
A | HIS25 | |
A | CYS274 | |
A | CYS277 | |
A | CYS286 | |
A | CYS289 | |
C | CYS3 | |
C | CYS6 | |
C | CYS22 | |
B | CYS6 | |
C | HIS25 | |
C | CYS274 | |
C | CYS277 | |
C | CYS286 | |
C | CYS289 | |
B | CYS22 | |
B | HIS25 | |
B | CYS274 | |
B | CYS277 | |
B | CYS286 | |
B | CYS289 | |
A | CYS3 |
site_id | SWS_FT_FI2 |
Number of Residues | 15 |
Details | BINDING: BINDING => ECO:0000269|PubMed:28439027, ECO:0007744|PDB:5B4E |
Chain | Residue | Details |
B | ALA53 | |
A | ASP161 | |
C | ALA53 | |
C | ASP59 | |
C | ILE79 | |
C | GLY156 | |
C | ASP161 | |
B | ASP59 | |
B | ILE79 | |
B | GLY156 | |
B | ASP161 | |
A | ALA53 | |
A | ASP59 | |
A | ILE79 | |
A | GLY156 |
site_id | SWS_FT_FI3 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000269|PubMed:28439027, ECO:0007744|PDB:5B4E, ECO:0007744|PDB:5B4F |
Chain | Residue | Details |
B | CYS130 | |
B | CYS133 | |
B | CYS222 | |
A | CYS130 | |
A | CYS133 | |
A | CYS222 | |
C | CYS130 | |
C | CYS133 | |
C | CYS222 |
site_id | SWS_FT_FI4 |
Number of Residues | 12 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in TtuB) => ECO:0000269|PubMed:22467871 |
Chain | Residue | Details |
B | LYS137 | |
C | LYS226 | |
C | LYS229 | |
B | LYS226 | |
B | LYS229 | |
A | LYS137 | |
A | LYS226 | |
A | LYS229 | |
C | LYS137 |