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5ZQD

Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Cefotaxime bound form

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
B0006508biological_processproteolysis
B0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
C0006508biological_processproteolysis
C0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
D0006508biological_processproteolysis
D0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
E0006508biological_processproteolysis
E0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
F0006508biological_processproteolysis
F0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
G0006508biological_processproteolysis
G0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
H0006508biological_processproteolysis
H0009002molecular_functionserine-type D-Ala-D-Ala carboxypeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue CEF A 301
ChainResidue
AALA57
AARG257
AHOH485
ASER58
AVAL94
ASER118
AASN120
ATHR223
AGLY224
APHE225
ATHR226

site_idAC2
Number of Residues10
Detailsbinding site for residue GOL A 302
ChainResidue
ALEU69
AVAL72
AASP73
ATRP79
AGLU187
AHOH427
AHOH467
DTYR28
DSER30
DLYS256

site_idAC3
Number of Residues8
Detailsbinding site for residue GOL B 302
ChainResidue
BVAL72
BASP73
BTRP79
BGLU187
BHOH437
CTYR28
CSER30
CLYS256

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL B 303
ChainResidue
BGLY164
BSER166
BGLU228
BHOH486
FGLY213

site_idAC5
Number of Residues3
Detailsbinding site for residue GOL B 304
ChainResidue
BGLY42
BLYS172
BPHE175

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL C 302
ChainResidue
BTYR28
BLEU29
BSER30
BLYS256
CLEU69
CASP73
CTRP79
CGLU187
CHOH457

site_idAC7
Number of Residues9
Detailsbinding site for residue GOL D 302
ChainResidue
ATYR28
ASER30
ALYS256
DVAL72
DASP73
DTRP79
DGLU187
DHOH461
DHOH482

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL E 302
ChainResidue
EVAL72
EASP73
ETRP79
EGLU187
EHOH427
HSER30
HLYS256

site_idAC9
Number of Residues3
Detailsbinding site for residue GOL E 303
ChainResidue
ESER30
EASP250
EALA251

site_idAD1
Number of Residues7
Detailsbinding site for residue GOL F 302
ChainResidue
FVAL72
FASP73
FTRP79
FGLU187
FHOH484
GSER30
GLYS256

site_idAD2
Number of Residues9
Detailsbinding site for residue GOL G 302
ChainResidue
FTYR28
FSER30
FLYS256
GLEU69
GVAL72
GASP73
GTRP79
GGLU187
GHOH416

site_idAD3
Number of Residues9
Detailsbinding site for residue GOL H 302
ChainResidue
ETYR28
ELEU29
EHOH419
HLEU69
HVAL72
HASP73
HTRP79
HGLU187
HHOH472

site_idAD4
Number of Residues15
Detailsbinding site for Di-peptide CEF B 301 and SER B 58
ChainResidue
BLEU160
BTHR223
BGLY224
BPHE225
BTHR226
BARG257
BILE56
BALA57
BLEU59
BSER60
BLYS61
BVAL94
BSER118
BASN120
BSER158

site_idAD5
Number of Residues16
Detailsbinding site for Di-peptide CEF C 301 and SER C 58
ChainResidue
CILE56
CALA57
CLEU59
CSER60
CLYS61
CSER118
CASN120
CSER158
CLEU160
CLYS222
CTHR223
CGLY224
CPHE225
CTHR226
CARG257
CHOH405

site_idAD6
Number of Residues16
Detailsbinding site for Di-peptide CEF C 303 and LYS C 204
ChainResidue
ALYS82
ALEU83
AASP84
ATHR104
AHOH409
CVAL197
CTHR198
CGLY202
CALA203
CLEU205
CHOH401
CHOH412
CHOH422
CHOH483
CHOH488
CHOH502

site_idAD7
Number of Residues20
Detailsbinding site for Di-peptide CEF D 301 and SER D 58
ChainResidue
DILE56
DALA57
DLEU59
DSER60
DLYS61
DVAL94
DSER118
DASN120
DSER158
DLEU160
DTHR208
DLYS222
DTHR223
DGLY224
DPHE225
DTHR226
DARG257
DHOH401
DHOH444
DHOH491

site_idAD8
Number of Residues13
Detailsbinding site for Di-peptide CEF D 303 and LYS D 204
ChainResidue
BLYS82
BLEU83
BASP84
BTHR104
BHOH406
BHOH422
DVAL197
DGLY202
DALA203
DLEU205
DHOH405
DHOH438
DHOH450

site_idAD9
Number of Residues17
Detailsbinding site for Di-peptide CEF E 301 and SER E 58
ChainResidue
EILE56
EALA57
ELEU59
ESER60
ELYS61
EVAL94
ESER118
EASN120
ESER158
ELEU160
ETHR208
ETHR223
EGLY224
EPHE225
ETHR226
EARG257
EHOH405

site_idAE1
Number of Residues17
Detailsbinding site for Di-peptide CEF F 301 and SER F 58
ChainResidue
FILE56
FALA57
FLEU59
FSER60
FLYS61
FVAL94
FSER118
FASN120
FSER158
FLEU160
FLYS222
FTHR223
FGLY224
FPHE225
FTHR226
FARG257
FHOH454

site_idAE2
Number of Residues18
Detailsbinding site for Di-peptide CEF G 301 and SER G 58
ChainResidue
GILE56
GALA57
GLEU59
GSER60
GLYS61
GVAL94
GSER118
GASN120
GSER158
GLEU160
GLYS222
GTHR223
GGLY224
GPHE225
GTHR226
GARG257
GHOH458
GHOH498

site_idAE3
Number of Residues8
Detailsbinding site for Di-peptide CEF G 303 and LYS G 204
ChainResidue
GVAL197
GGLY202
GALA203
GLEU205
GGLU206
GHOH401
GHOH403
GHOH470

site_idAE4
Number of Residues16
Detailsbinding site for Di-peptide CEF H 301 and SER H 58
ChainResidue
HILE56
HALA57
HLEU59
HSER60
HLYS61
HVAL94
HSER118
HASN120
HSER158
HTHR208
HTHR223
HGLY224
HPHE225
HTHR226
HARG257
HHOH491

site_idAE5
Number of Residues8
Detailsbinding site for Di-peptide CEF H 303 and LYS H 204
ChainResidue
HVAL197
HGLY202
HALA203
HLEU205
HGLU206
HHOH438
HHOH446
HHOH520

243531

PDB entries from 2025-10-22

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