5ZQB

Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Penicillin G bound form

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006508	biological_process	proteolysis
A	0009002	molecular_function	serine-type D-Ala-D-Ala carboxypeptidase activity
B	0006508	biological_process	proteolysis
B	0009002	molecular_function	serine-type D-Ala-D-Ala carboxypeptidase activity
C	0006508	biological_process	proteolysis
C	0009002	molecular_function	serine-type D-Ala-D-Ala carboxypeptidase activity
D	0006508	biological_process	proteolysis
D	0009002	molecular_function	serine-type D-Ala-D-Ala carboxypeptidase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	binding site for residue PNM A 301

Chain	Residue
A	ALA57
A	PHE225
A	ARG257
A	SER58
A	SER92
A	ALA93
A	VAL94
A	SER118
A	ASN120
A	THR223
A	GLY224

---

site_id	AC2
Number of Residues	8
Details	binding site for residue GOL A 302

Chain	Residue
A	LEU69
A	VAL72
A	ASP73
A	TRP79
A	GLU187
A	HOH453
B	TYR28
B	LYS256

---

site_id	AC3
Number of Residues	6
Details	binding site for residue GOL B 302

Chain	Residue
A	LYS256
B	VAL72
B	ASP73
B	TRP79
B	GLU187
B	HOH436

---

site_id	AC4
Number of Residues	7
Details	binding site for residue GOL B 303

Chain	Residue
B	ASN140
B	ALA143
B	LYS144
B	MET148
B	SER149
B	SER150
B	THR152

---

site_id	AC5
Number of Residues	10
Details	binding site for residue GOL C 302

Chain	Residue
C	LEU69
C	VAL72
C	ASP73
C	TRP79
C	GLU187
C	HOH437
C	HOH455
D	TYR28
D	SER30
D	LYS256

---

site_id	AC6
Number of Residues	6
Details	binding site for residue GOL C 303

Chain	Residue
A	LEU212
A	GLY213
A	SER214
C	ASN140
C	THR152
C	THR153

---

site_id	AC7
Number of Residues	10
Details	binding site for residue GOL D 302

Chain	Residue
C	TYR28
C	SER30
C	LYS256
C	HOH458
D	LEU69
D	VAL72
D	ASP73
D	TRP79
D	GLU187
D	HOH450

---

site_id	AC8
Number of Residues	3
Details	binding site for residue GOL D 303

Chain	Residue
D	GLY42
D	LYS172
D	PHE175

---

site_id	AC9
Number of Residues	6
Details	binding site for residue GOL D 304

Chain	Residue
D	ASN140
D	LYS144
D	MET148
D	SER149
D	SER150
D	THR152

---

site_id	AD1
Number of Residues	14
Details	binding site for Di-peptide PNM B 301 and SER B 58

Chain	Residue
B	ILE56
B	ALA57
B	LEU59
B	SER60
B	LYS61
B	ASP90
B	SER118
B	ASN120
B	SER158
B	LEU160
B	THR223
B	GLY224
B	PHE225
B	ARG257

---

site_id	AD2
Number of Residues	16
Details	binding site for Di-peptide PNM C 301 and SER C 58

Chain	Residue
C	ILE56
C	ALA57
C	LEU59
C	SER60
C	LYS61
C	ASP90
C	SER92
C	ALA93
C	SER118
C	ASN120
C	SER158
C	THR223
C	GLY224
C	PHE225
C	ARG257
C	HOH410

---

site_id	AD3
Number of Residues	13
Details	binding site for Di-peptide PNM D 301 and SER D 58

Chain	Residue
D	LEU59
D	SER60
D	LYS61
D	SER92
D	SER118
D	ASN120
D	SER158
D	THR223
D	GLY224
D	PHE225
D	ARG257
D	ILE56
D	ALA57

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