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5ZHZ

Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0008081molecular_functionphosphoric diester hydrolase activity
A0008270molecular_functionzinc ion binding
A0008833molecular_functiondeoxyribonuclease IV (phage-T4-induced) activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue SO4 A 301
ChainResidue
AARG71
AARG75
ALYS115
AARG119
AHOH553
AHOH563
AHOH593

site_idAC2
Number of Residues11
Detailsbinding site for residue SO4 A 302
ChainResidue
AASP135
AHIS136
AALA137
AARG140
AHOH426
AHOH491
AHOH515
AHOH557
AHOH569
AGLY133
AGLY134

site_idAC3
Number of Residues15
Detailsbinding site for residue SO4 A 303
ChainResidue
AHIS56
ATYR59
AHIS96
AGLU129
AASP162
AHIS165
AASP204
AHIS206
AGLU233
AZN304
AZN305
AZN306
AHOH411
AHOH556
AHOH615

site_idAC4
Number of Residues6
Detailsbinding site for residue ZN A 304
ChainResidue
AHIS56
AHIS96
AGLU129
ASO4303
AZN305
AHOH411

site_idAC5
Number of Residues7
Detailsbinding site for residue ZN A 305
ChainResidue
AGLU129
AASP162
AHIS191
AGLU233
ASO4303
AZN304
AHOH411

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN A 306
ChainResidue
AHIS165
AASP204
AHIS206
ASO4303

Functional Information from PROSITE/UniProt
site_idPS00729
Number of Residues9
DetailsAP_NUCLEASE_F2_1 AP endonucleases family 2 signature 1. HApYLINLA
ChainResidueDetails
AHIS56-ALA64

site_idPS00730
Number of Residues8
DetailsAP_NUCLEASE_F2_2 AP endonucleases family 2 signature 2. GFCLDTCH
ChainResidueDetails
AGLY158-HIS165

site_idPS00731
Number of Residues17
DetailsAP_NUCLEASE_F2_3 AP endonucleases family 2 signature 3. VHcNDSrdeaGsgrDrH
ChainResidueDetails
AVAL190-HIS206

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues9
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00152
ChainResidueDetails
AHIS56
AHIS96
AGLU129
AASP162
AHIS165
AHIS191
AASP204
AHIS206
AGLU233

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PDB entries from 2024-07-17

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