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5ZHW

VanYB in complex with D-Alanine-D-Alanine

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0008233molecular_functionpeptidase activity
B0006508biological_processproteolysis
B0008233molecular_functionpeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue CU A 301
ChainResidue
AHIS188
AASP195
AHIS241
ADAL303

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL A 304
ChainResidue
AHOH456
BGLU153
ASER112
AASN113
AARG133
AILE140
AVAL141

site_idAC3
Number of Residues4
Detailsbinding site for residue PG4 A 305
ChainResidue
ASER143
AASP195
AASN197
ATRP240

site_idAC4
Number of Residues5
Detailsbinding site for residue CU B 301
ChainResidue
BHIS188
BASP195
BHIS241
BDAL302
BDAL303

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL B 304
ChainResidue
AGLU153
BSER112
BASN113
BARG133
BILE140
BVAL141

site_idAC6
Number of Residues3
Detailsbinding site for residue PG4 B 305
ChainResidue
BASP195
BASN197
BDAL303

site_idAC7
Number of Residues12
Detailsbinding site for Di-peptide DAL A 302 and DAL A 303
ChainResidue
AARG146
AGLN151
ATRP179
AALA181
ASER186
AHIS188
AASP195
AGLU238
ATRP240
AHIS241
ACU301
AHOH401

site_idAC8
Number of Residues14
Detailsbinding site for Di-peptide DAL B 302 and DAL B 303
ChainResidue
BARG146
BGLN151
BTRP179
BVAL180
BALA181
BSER186
BHIS188
BASP195
BGLU238
BTRP240
BHIS241
BCU301
BPG4305
BHOH401

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"30016658","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30016658","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"30016658","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5HNM","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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