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5ZGW

Crystal structure of NDM-1 at pH7.5 with 1 molecule per asymmetric unit (crystallized at succinate pH5.5 and soaked at succinate pH7.5)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 301
ChainResidue
AHIS120
AHIS122
AHIS189
AZN302
AOH303

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 302
ChainResidue
AOH303
AHOH404
AASP124
ACYS208
AHIS250
AZN301

site_idAC3
Number of Residues8
Detailsbinding site for residue OH A 303
ChainResidue
AHIS120
AHIS122
AASP124
AHIS189
ACYS208
AZN301
AZN302
AHOH404

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 304
ChainResidue
ALEU65
AMET67
AGLN123
AHOH491
AHOH593

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 305
ChainResidue
AASP95
AALA131
AALA257
ATHR260
AHIS261
AHOH413
AHOH441
AHOH488

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO A 306
ChainResidue
APRO171
AALA174
AASN176
APHE177

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 307
ChainResidue
AHIS133
AGLY237
AARG256
AILE259
AHOH469
AHOH497

site_idAC8
Number of Residues8
Detailsbinding site for residue EDO A 308
ChainResidue
AHIS120
AALA121
ALEU148
ATHR190
AASP192
AASP223
AHOH407
AHOH554

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO A 309
ChainResidue
ALYS181
AGLY197
AILE198
AASP199
AILE203
AALA243
AHOH526

site_idAD1
Number of Residues10
Detailsbinding site for residue GOL A 310
ChainResidue
ATRP93
ATHR94
AASP95
AGLN123
AGLY127
AHOH401
AHOH421
AHOH424
AHOH448
AHOH540

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:22713171, ECO:0000269|PubMed:25815530
ChainResidueDetails
AHIS120
AHIS122
AASP124
AHIS189
ACYS208
AHIS250

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:22713171
ChainResidueDetails
ALYS211
AASN220

219140

PDB entries from 2024-05-01

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