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5ZGI

Crystal structure of NDM-1 at pH6.5 (Succinate) with 1 molecule per asymmetric unit

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 301
ChainResidue
AHIS120
AHIS122
AHIS189
AOH303

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 302
ChainResidue
AASP124
ACYS208
AHIS250
AOH303
ASIN306

site_idAC3
Number of Residues8
Detailsbinding site for residue OH A 303
ChainResidue
AHIS120
AHIS122
AASP124
AHIS189
ACYS208
AZN301
AZN302
ASIN306

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 304
ChainResidue
ATHR94
AGLN123
AHOH430
AHOH441

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 305
ChainResidue
ALYS106
AASN110
ALEU111
APRO112
AHOH410
AHOH435

site_idAC6
Number of Residues9
Detailsbinding site for residue SIN A 306
ChainResidue
AASP124
AHIS189
AASN220
AHIS250
AZN302
AOH303
AHOH530
AHOH540
AHOH601

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 307
ChainResidue
AHIS133
AGLY237
AARG256
AILE259
AHOH444
AHOH455

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22713171","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25815530","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22713171","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243911

PDB entries from 2025-10-29

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