Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5ZCO

azide-bound cytochrome c oxidase structure determined using the crystals exposed to 2 mM azide solution for 2 days

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004129	molecular_function	cytochrome-c oxidase activity
A	0005739	cellular_component	mitochondrion
A	0005743	cellular_component	mitochondrial inner membrane
A	0006119	biological_process	oxidative phosphorylation
A	0009060	biological_process	aerobic respiration
A	0016020	cellular_component	membrane
A	0020037	molecular_function	heme binding
A	0022904	biological_process	respiratory electron transport chain
A	0045277	cellular_component	respiratory chain complex IV
A	0046872	molecular_function	metal ion binding
A	1902600	biological_process	proton transmembrane transport
B	0004129	molecular_function	cytochrome-c oxidase activity
B	0005507	molecular_function	copper ion binding
B	0005739	cellular_component	mitochondrion
B	0005743	cellular_component	mitochondrial inner membrane
B	0016020	cellular_component	membrane
B	0016491	molecular_function	oxidoreductase activity
B	0022900	biological_process	electron transport chain
B	0031966	cellular_component	mitochondrial membrane
B	0042773	biological_process	ATP synthesis coupled electron transport
B	0045277	cellular_component	respiratory chain complex IV
B	0046872	molecular_function	metal ion binding
B	1902600	biological_process	proton transmembrane transport
C	0004129	molecular_function	cytochrome-c oxidase activity
C	0005739	cellular_component	mitochondrion
C	0005743	cellular_component	mitochondrial inner membrane
C	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
C	0008535	biological_process	respiratory chain complex IV assembly
C	0009055	molecular_function	electron transfer activity
C	0016020	cellular_component	membrane
C	0019646	biological_process	aerobic electron transport chain
C	0022904	biological_process	respiratory electron transport chain
C	0045277	cellular_component	respiratory chain complex IV
C	1902600	biological_process	proton transmembrane transport
D	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
D	0045277	cellular_component	respiratory chain complex IV
E	0005743	cellular_component	mitochondrial inner membrane
E	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
E	0045277	cellular_component	respiratory chain complex IV
F	0005740	cellular_component	mitochondrial envelope
F	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
F	0045277	cellular_component	respiratory chain complex IV
G	0005743	cellular_component	mitochondrial inner membrane
H	0005739	cellular_component	mitochondrion
H	0005743	cellular_component	mitochondrial inner membrane
H	0006119	biological_process	oxidative phosphorylation
H	0045277	cellular_component	respiratory chain complex IV
I	0005739	cellular_component	mitochondrion
I	0005743	cellular_component	mitochondrial inner membrane
I	0006119	biological_process	oxidative phosphorylation
I	0045277	cellular_component	respiratory chain complex IV
J	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
J	0045277	cellular_component	respiratory chain complex IV
K	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
L	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
L	0045277	cellular_component	respiratory chain complex IV
M	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
M	0045277	cellular_component	respiratory chain complex IV
N	0004129	molecular_function	cytochrome-c oxidase activity
N	0005739	cellular_component	mitochondrion
N	0005743	cellular_component	mitochondrial inner membrane
N	0006119	biological_process	oxidative phosphorylation
N	0009060	biological_process	aerobic respiration
N	0016020	cellular_component	membrane
N	0020037	molecular_function	heme binding
N	0022904	biological_process	respiratory electron transport chain
N	0045277	cellular_component	respiratory chain complex IV
N	0046872	molecular_function	metal ion binding
N	1902600	biological_process	proton transmembrane transport
O	0004129	molecular_function	cytochrome-c oxidase activity
O	0005507	molecular_function	copper ion binding
O	0005739	cellular_component	mitochondrion
O	0005743	cellular_component	mitochondrial inner membrane
O	0016020	cellular_component	membrane
O	0016491	molecular_function	oxidoreductase activity
O	0022900	biological_process	electron transport chain
O	0031966	cellular_component	mitochondrial membrane
O	0042773	biological_process	ATP synthesis coupled electron transport
O	0045277	cellular_component	respiratory chain complex IV
O	0046872	molecular_function	metal ion binding
O	1902600	biological_process	proton transmembrane transport
P	0004129	molecular_function	cytochrome-c oxidase activity
P	0005739	cellular_component	mitochondrion
P	0005743	cellular_component	mitochondrial inner membrane
P	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
P	0008535	biological_process	respiratory chain complex IV assembly
P	0009055	molecular_function	electron transfer activity
P	0016020	cellular_component	membrane
P	0019646	biological_process	aerobic electron transport chain
P	0022904	biological_process	respiratory electron transport chain
P	0045277	cellular_component	respiratory chain complex IV
P	1902600	biological_process	proton transmembrane transport
Q	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
Q	0045277	cellular_component	respiratory chain complex IV
R	0005743	cellular_component	mitochondrial inner membrane
R	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
R	0045277	cellular_component	respiratory chain complex IV
S	0005740	cellular_component	mitochondrial envelope
S	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
S	0045277	cellular_component	respiratory chain complex IV
T	0005743	cellular_component	mitochondrial inner membrane
U	0005739	cellular_component	mitochondrion
U	0005743	cellular_component	mitochondrial inner membrane
U	0006119	biological_process	oxidative phosphorylation
U	0045277	cellular_component	respiratory chain complex IV
V	0005739	cellular_component	mitochondrion
V	0005743	cellular_component	mitochondrial inner membrane
V	0006119	biological_process	oxidative phosphorylation
V	0045277	cellular_component	respiratory chain complex IV
W	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
W	0045277	cellular_component	respiratory chain complex IV
X	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
Y	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
Y	0045277	cellular_component	respiratory chain complex IV
Z	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
Z	0045277	cellular_component	respiratory chain complex IV

Functional Information from PDB Data

site_id	AC1
Number of Residues	32
Details	binding site for residue HEA A 601

Chain	Residue
A	MET28
A	MET65
A	VAL70
A	ILE73
A	GLY125
A	TRP126
A	TYR371
A	PHE377
A	HIS378
A	SER382
A	MET383
A	THR31
A	VAL386
A	PHE393
A	MET417
A	PHE425
A	GLN428
A	ARG438
A	ARG439
A	TYR440
A	VAL465
A	MET468
A	SER34
A	HOH713
A	HOH738
A	HOH862
A	ILE37
A	ARG38
A	TYR54
A	VAL58
A	HIS61
A	ALA62

site_id	AC2
Number of Residues	37
Details	binding site for residue HEA A 602

Chain	Residue
A	TRP126
A	TRP236
A	VAL243
A	TYR244
A	ILE247
A	HIS290
A	HIS291
A	THR309
A	ILE312
A	ALA313
A	THR316
A	GLY317
A	VAL320
A	PHE348
A	THR349
A	GLY352
A	GLY355
A	ILE356
A	LEU358
A	ALA359
A	ASP364
A	HIS368
A	VAL373
A	HIS376
A	PHE377
A	VAL380
A	LEU381
A	ARG438
A	AZI606
A	AZI607
A	HOH722
A	HOH726
A	HOH744
A	HOH758
A	HOH785
B	ILE34
B	PRO69

site_id	AC3
Number of Residues	5
Details	binding site for residue CU A 603

Chain	Residue
A	HIS240
A	HIS290
A	HIS291
A	AZI606
A	AZI607

site_id	AC4
Number of Residues	6
Details	binding site for residue MG A 604

Chain	Residue
A	HIS368
A	ASP369
B	GLU198
B	HOH437
B	HOH448
B	HOH523

site_id	AC5
Number of Residues	4
Details	binding site for residue NA A 605

Chain	Residue
A	GLU40
A	GLY45
A	SER441
A	HOH876

site_id	AC6
Number of Residues	9
Details	binding site for residue AZI A 606

Chain	Residue
A	HIS240
A	TYR244
A	HIS290
A	THR309
A	HEA602
A	CU603
A	AZI607
A	HOH719
A	HOH785

site_id	AC7
Number of Residues	8
Details	binding site for residue AZI A 607

Chain	Residue
A	CU603
A	AZI606
A	TRP236
A	HIS240
A	VAL243
A	HIS290
A	HIS291
A	HEA602

site_id	AC8
Number of Residues	16
Details	binding site for residue PGV A 608

Chain	Residue
A	PHE94
A	PRO95
A	ARG96
A	MET97
A	PHE148
A	ILE158
A	HOH766
A	HOH790
C	HIS9
C	ASN50
C	TRP57
C	TRP58
C	GLU64
C	HIS71
C	GLY82
G	PEK101

site_id	AC9
Number of Residues	10
Details	binding site for residue PGV A 609

Chain	Residue
A	ASN406
A	THR408
A	TRP409
D	ALA84
D	PHE87
K	PHE9
K	HIS10
M	GLN15
M	LEU19
M	HOH222

site_id	AD1
Number of Residues	9
Details	binding site for residue EDO A 610

Chain	Residue
A	ARG5
A	ASN11
A	LYS13
A	ASP14
A	TRP81
A	PRO499
A	PRO500
A	TYR502
L	ASN10

site_id	AD2
Number of Residues	4
Details	binding site for residue EDO A 611

Chain	Residue
A	ALA120
A	ALA137
A	HOH716
A	HOH731

site_id	AD3
Number of Residues	5
Details	binding site for residue EDO A 612

Chain	Residue
A	ALA137
A	HOH709
A	HOH827
A	HOH907
B	GLN103

site_id	AD4
Number of Residues	8
Details	binding site for residue EDO A 613

Chain	Residue
A	HIS256
A	LYS265
A	THR490
A	ASN491
A	HOH733
A	HOH805
A	HOH865
F	EDO102

site_id	AD5
Number of Residues	1
Details	binding site for residue EDO A 614

Chain	Residue
C	PGV308

site_id	AD6
Number of Residues	5
Details	binding site for residue EDO A 615

Chain	Residue
A	TYR260
A	TYR261
A	HIS395
A	HOH723
M	HOH214

site_id	AD7
Number of Residues	2
Details	binding site for residue EDO A 616

Chain	Residue
A	THR489
A	HOH736

site_id	AD8
Number of Residues	10
Details	binding site for residue EDO A 617

Chain	Residue
A	LYS265
A	GLU266
A	HOH708
A	HOH714
A	HOH776
B	THR55
F	ASN66
F	ILE70
F	SER84
F	HOH209

site_id	AD9
Number of Residues	8
Details	binding site for residue EDO A 618

Chain	Residue
A	SER335
A	ASP407
A	HOH705
A	HOH861
A	HOH894
A	HOH902
M	ILE1
M	HOH214

site_id	AE1
Number of Residues	7
Details	binding site for residue EDO A 619

Chain	Residue
A	GLU507
A	HOH703
C	THR5
F	PRO30
F	ASN32
F	PRO50
F	ARG56

site_id	AE2
Number of Residues	11
Details	binding site for residue TGL B 301

Chain	Residue
A	ASN422
A	HIS429
A	PHE430
A	LEU433
B	LEU7
B	LEU28
B	PHE32
B	SER35
B	SER36
I	ARG43
I	HOH127

site_id	AE3
Number of Residues	12
Details	binding site for residue CHD B 302

Chain	Residue
A	MET271
A	TRP275
B	GLN59
B	GLU62
B	THR63
B	HOH452
B	HOH453
P	PEK307
T	ARG14
T	ARG17
T	PHE21
T	GLY22

site_id	AE4
Number of Residues	7
Details	binding site for residue CUA B 303

Chain	Residue
B	HIS161
B	CYS196
B	GLU198
B	CYS200
B	HIS204
B	MET207
B	HOH401

site_id	AE5
Number of Residues	10
Details	binding site for residue EDO B 304

Chain	Residue
A	PRO222
B	PRO176
B	GLY177
B	EDO305
B	HOH404
B	HOH405
B	HOH412
B	HOH431
B	HOH441
C	GLU111

site_id	AE6
Number of Residues	6
Details	binding site for residue EDO B 305

Chain	Residue
B	GLU157
B	EDO304
B	HOH412
B	HOH413
B	HOH441
B	HOH444

site_id	AE7
Number of Residues	3
Details	binding site for residue EDO B 306

Chain	Residue
B	HIS102
B	GLU157
B	ASP158

site_id	AE8
Number of Residues	8
Details	binding site for residue EDO B 307

Chain	Residue
A	TYR447
A	HOH799
B	ALA2
B	GLN10
B	LEU136
B	PRO166
B	TYR193
B	HOH467

site_id	AE9
Number of Residues	11
Details	binding site for residue CHD C 301

Chain	Residue
A	HIS233
A	ASP300
A	THR301
A	TYR304
A	HOH840
C	TRP99
C	HIS103
C	PGV308
C	HOH471
P	LEU127
T	CDL102

site_id	AF1
Number of Residues	9
Details	binding site for residue DMU C 302

Chain	Residue
C	MET33
C	PHE37
C	DMU311
C	HOH483
J	SER46
J	TYR48
J	CYS49
J	LEU50
J	TRP52

site_id	AF2
Number of Residues	23
Details	binding site for residue PGV C 304

Chain	Residue
C	MET51
C	MET54
C	TRP58
C	VAL61
C	SER65
C	THR66
C	HIS71
C	HIS207
C	ILE210
C	PHE214
C	ARG221
C	HIS226
C	PHE227
C	THR228
C	HIS231
C	HIS232
C	PHE233
C	GLY234
C	CDL305
C	HOH412
C	HOH416
C	HOH461
F	HOH221

site_id	AF3
Number of Residues	17
Details	binding site for residue CDL C 305

Chain	Residue
C	MET51
C	LEU52
C	TYR55
C	TRP58
C	ARG59
C	ILE62
C	ARG63
C	PHE67
C	THR174
C	THR213
C	PHE220
C	LYS224
C	HIS226
C	PGV304
C	HOH457
J	LYS8
J	LEU31

site_id	AF4
Number of Residues	5
Details	binding site for residue CHD C 306

Chain	Residue
C	ARG156
C	GLN161
C	PHE164
C	LEU223
J	PHE1

site_id	AF5
Number of Residues	10
Details	binding site for residue PEK C 307

Chain	Residue
C	LYS157
C	HIS158
C	GLN161
C	TYR172
F	ALA1
G	ARG17
G	CHD102
N	SER279
N	CDL601
O	HOH497

site_id	AF6
Number of Residues	9
Details	binding site for residue PGV C 308

Chain	Residue
A	ASP298
A	EDO614
C	TRP99
C	HIS103
C	ALA107
C	CHD301
C	HOH471
H	ASN22
H	ASN24

site_id	AF7
Number of Residues	12
Details	binding site for residue PEK C 309

Chain	Residue
C	ARG80
C	THR95
C	PHE98
C	GLU236
C	TRP240
C	VAL247
T	ALA3
T	LYS5
T	ASP7
T	HIS8
T	CDL102
T	HOH201

site_id	AF8
Number of Residues	6
Details	binding site for residue DMU C 310

Chain	Residue
C	TRP116
C	PRO117
C	TRP258
C	TRP259
C	SER261
U	PGV101

site_id	AF9
Number of Residues	8
Details	binding site for residue DMU C 311

Chain	Residue
C	MET33
C	ASN38
C	SER39
C	THR41
C	DMU302
C	HOH404
J	THR37
J	TYR45

site_id	AG1
Number of Residues	16
Details	binding site for residue TGL D 201

Chain	Residue
A	TRP334
A	LEU342
A	GLY343
A	PHE414
A	VAL419
A	HOH706
A	HOH926
B	ILE42
B	HOH548
D	ARG73
D	THR75
D	GLU77
D	TRP78
D	HOH353
I	ARG16
I	HIS20

site_id	AG2
Number of Residues	7
Details	binding site for residue EDO D 202

Chain	Residue
A	ARG38
A	ALA39
A	SER455
A	PHE459
D	LEU96
D	GLU99
D	TYR104

site_id	AG3
Number of Residues	1
Details	binding site for residue EDO D 203

Chain	Residue
D	ILE97

site_id	AG4
Number of Residues	11
Details	binding site for residue PSC E 201

Chain	Residue
A	PHE321
A	HIS328
B	HIS52
B	MET56
B	ASP57
E	HIS5
E	GLU6
E	ASP40
E	HOH328
I	ALA14
I	HOH110

site_id	AG5
Number of Residues	4
Details	binding site for residue EDO E 202

Chain	Residue
E	TYR18
E	LYS21
E	GLU28
E	HOH325

site_id	AG6
Number of Residues	3
Details	binding site for residue EDO E 203

Chain	Residue
E	ARG53
E	ARG57
E	HOH345

site_id	AG7
Number of Residues	4
Details	binding site for residue EDO E 204

Chain	Residue
D	LYS56
D	HOH311
E	GLY97
E	SER99

site_id	AG8
Number of Residues	4
Details	binding site for residue ZN F 101

Chain	Residue
F	CYS60
F	CYS62
F	CYS82
F	CYS85

site_id	AG9
Number of Residues	9
Details	binding site for residue EDO F 102

Chain	Residue
A	THR490
A	EDO613
A	HOH764
F	SER67
F	THR68
F	VAL69
F	TRP71
F	HOH244
F	HOH259

site_id	AH1
Number of Residues	6
Details	binding site for residue EDO F 103

Chain	Residue
A	TYR510
F	LYS37
F	THR39
F	LEU48
F	HOH208
F	HOH237

site_id	AH2
Number of Residues	5
Details	binding site for residue EDO F 104

Chain	Residue
C	HOH463
F	ASP9
F	GLU17
F	HOH211
F	HOH243

site_id	AH3
Number of Residues	20
Details	binding site for residue PEK G 101

Chain	Residue
A	HIS151
A	VAL155
A	PGV608
C	TRP34
C	TYR181
C	TYR182
C	ALA184
C	PHE186
C	THR187
C	ILE188
C	PHE198
C	GLY202
G	TRP62
G	THR68
G	PHE69
G	PHE70
G	HIS71
G	ASN76
G	HOH201
G	HOH222

site_id	AH4
Number of Residues	10
Details	binding site for residue CHD G 102

Chain	Residue
C	PEK307
G	ARG14
G	ARG17
G	PHE21
G	GLY22
G	HOH206
G	HOH209
N	MET271
O	GLU62
O	THR63

site_id	AH5
Number of Residues	9
Details	binding site for residue PEK G 103

Chain	Residue
G	SER2
G	ASP7
N	CDL601
P	ARG80
P	VAL91
P	THR95
P	PHE98
P	TRP240
P	VAL247

site_id	AH6
Number of Residues	7
Details	binding site for residue EDO G 104

Chain	Residue
C	GLY120
G	ALA46
G	PHE47
G	ILE48
G	LEU53
G	ARG54
G	HOH210

site_id	AH7
Number of Residues	4
Details	binding site for residue EDO G 105

Chain	Residue
C	PHE35
G	LYS58
G	PRO59
G	SER61

site_id	AH8
Number of Residues	4
Details	binding site for residue CHD J 101

Chain	Residue
A	LEU7
J	ARG33
J	MET36
J	THR37

site_id	AH9
Number of Residues	11
Details	binding site for residue TGL L 101

Chain	Residue
A	PHE2
A	THR17
A	PHE22
A	TRP25
A	PHE400
L	ILE11
L	PRO12
L	PHE13
L	SER14
L	ARG20
L	PHE29

site_id	AI1
Number of Residues	2
Details	binding site for residue EDO L 102

Chain	Residue
C	PRO13
L	HIS2

site_id	AI2
Number of Residues	5
Details	binding site for residue DMU M 101

Chain	Residue
D	TRP98
M	LEU28
M	TRP32
M	TYR35
M	HIS36

site_id	AI3
Number of Residues	16
Details	binding site for residue CDL N 601

Chain	Residue
C	ASN125
C	TYR253
C	VAL254
C	TRP258
C	PEK307
G	ASN34
G	HIS38
G	PEK103
N	ASP300
N	SER307
N	ILE311
O	ALA77
O	LEU78
O	ARG82
O	TYR85
P	CHD301

site_id	AI4
Number of Residues	31
Details	binding site for residue HEA N 602

Chain	Residue
N	MET28
N	THR31
N	SER34
N	ILE37
N	ARG38
N	TYR54
N	VAL58
N	HIS61
N	ALA62
N	MET65
N	VAL70
N	GLY125
N	TRP126
N	TYR371
N	PHE377
N	HIS378
N	SER382
N	MET383
N	VAL386
N	PHE393
N	MET417
N	PHE425
N	GLN428
N	ARG438
N	ARG439
N	TYR440
N	VAL465
N	MET468
N	HOH717
N	HOH739
N	HOH825

site_id	AI5
Number of Residues	34
Details	binding site for residue HEA N 603

Chain	Residue
N	TRP126
N	TRP236
N	VAL243
N	TYR244
N	ILE247
N	HIS290
N	HIS291
N	THR309
N	ILE312
N	ALA313
N	THR316
N	GLY317
N	GLY352
N	GLY355
N	ILE356
N	LEU358
N	ALA359
N	ASP364
N	HIS368
N	VAL373
N	HIS376
N	PHE377
N	VAL380
N	LEU381
N	ARG438
N	AZI607
N	AZI608
N	HOH709
N	HOH721
N	HOH731
N	HOH796
N	HOH805
O	ILE34
O	PRO69

site_id	AI6
Number of Residues	5
Details	binding site for residue CU N 604

Chain	Residue
N	HIS240
N	HIS290
N	HIS291
N	AZI607
N	AZI608

site_id	AI7
Number of Residues	6
Details	binding site for residue MG N 605

Chain	Residue
N	HIS368
N	ASP369
O	GLU198
O	HOH407
O	HOH430
O	HOH481

site_id	AI8
Number of Residues	4
Details	binding site for residue NA N 606

Chain	Residue
N	GLU40
N	GLY45
N	SER441
N	HOH859

site_id	AI9
Number of Residues	9
Details	binding site for residue AZI N 607

Chain	Residue
N	HIS240
N	TYR244
N	HIS290
N	THR309
N	HEA603
N	CU604
N	AZI608
N	HOH707
N	HOH805

site_id	AJ1
Number of Residues	8
Details	binding site for residue AZI N 608

Chain	Residue
N	TRP236
N	GLY239
N	HIS240
N	VAL243
N	HIS291
N	HEA603
N	CU604
N	AZI607

site_id	AJ2
Number of Residues	18
Details	binding site for residue PGV N 609

Chain	Residue
N	PHE94
N	PRO95
N	ARG96
N	MET97
N	PHE148
N	HOH724
N	HOH781
P	HIS9
P	ASN50
P	MET54
P	TRP57
P	TRP58
P	VAL61
P	GLU64
P	HIS71
P	LEU79
P	GLY82
T	PEK101

site_id	AJ3
Number of Residues	11
Details	binding site for residue TGL N 610

Chain	Residue
N	TYR379
N	ASN422
N	PHE426
N	LEU433
N	HOH906
O	LEU7
O	GLY8
O	LEU28
O	PHE32
O	SER35
V	ARG43

site_id	AJ4
Number of Residues	7
Details	binding site for residue EDO N 611

Chain	Residue
N	LYS265
N	THR490
N	ASN491
N	HOH768
N	HOH773
N	HOH857
S	EDO102

site_id	AJ5
Number of Residues	5
Details	binding site for residue EDO N 612

Chain	Residue
N	TYR260
N	TYR261
N	HIS395
N	TRP494
N	HOH766

site_id	AJ6
Number of Residues	5
Details	binding site for residue EDO N 613

Chain	Residue
N	GLU507
P	THR5
S	PRO30
S	ASN32
S	PRO50

site_id	AJ7
Number of Residues	6
Details	binding site for residue EDO N 614

Chain	Residue
N	TYR510
N	HOH874
S	PRO36
S	LYS37
S	THR39
S	LEU48

site_id	AJ8
Number of Residues	5
Details	binding site for residue EDO N 615

Chain	Residue
N	LEU136
N	ALA137
N	HOH702
N	HOH843
O	GLN103

site_id	AJ9
Number of Residues	4
Details	binding site for residue EDO N 616

Chain	Residue
N	ALA137
N	ALA139
N	HOH704
N	HOH712

site_id	AK1
Number of Residues	6
Details	binding site for residue EDO N 617

Chain	Residue
N	PRO131
N	ASP221
N	HOH701
N	HOH729
N	HOH756
N	HOH810

site_id	AK2
Number of Residues	8
Details	binding site for residue EDO N 618

Chain	Residue
N	LEU483
N	THR484
N	VAL485
N	TRP494
N	GLY497
N	CYS498
N	HOH824
Q	TYR11

site_id	AK3
Number of Residues	2
Details	binding site for residue EDO N 619

Chain	Residue
N	THR489
N	HOH862

site_id	AK4
Number of Residues	8
Details	binding site for residue EDO N 620

Chain	Residue
N	ARG5
N	ASN11
N	LYS13
N	ASP14
N	TRP81
N	PRO500
N	TYR502
Y	ASN10

site_id	AK5
Number of Residues	6
Details	binding site for residue CUA O 301

Chain	Residue
O	HIS161
O	CYS196
O	GLU198
O	CYS200
O	HIS204
O	MET207

site_id	AK6
Number of Residues	11
Details	binding site for residue PSC O 302

Chain	Residue
N	PHE321
N	HIS328
O	ILE41
O	HIS52
O	MET56
O	ASP57
O	HOH462
R	ASP8
R	LEU41
R	HOH318
V	ARG10

site_id	AK7
Number of Residues	8
Details	binding site for residue EDO O 303

Chain	Residue
N	TYR447
O	ALA2
O	GLN10
O	LEU136
O	PRO166
O	TYR193
O	HOH412
O	HOH472

site_id	AK8
Number of Residues	9
Details	binding site for residue CHD P 301

Chain	Residue
N	HIS233
N	ASP300
N	THR301
N	TYR304
N	CDL601
N	HOH814
P	TRP99
P	HIS103
U	PGV101

site_id	AK9
Number of Residues	18
Details	binding site for residue PGV P 303

Chain	Residue
P	MET54
P	VAL61
P	SER65
P	THR66
P	HIS71
P	ILE210
P	PHE214
P	ARG221
P	HIS226
P	PHE227
P	THR228
P	HIS231
P	PHE233
P	GLY234
P	HOH408
P	HOH426
P	HOH431
P	HOH468

site_id	AL1
Number of Residues	12
Details	binding site for residue CDL P 304

Chain	Residue
P	MET51
P	LEU52
P	TYR55
P	ARG59
P	ILE62
P	ARG63
P	PHE67
P	PHE220
P	LYS224
P	HIS226
P	HOH462
W	LYS8

site_id	AL2
Number of Residues	6
Details	binding site for residue CHD P 305

Chain	Residue
P	ARG156
P	GLN161
P	PHE164
P	PHE219
P	LEU223
W	PHE1

site_id	AL3
Number of Residues	9
Details	binding site for residue DMU P 306

Chain	Residue
N	LEU110
P	SER29
P	MET33
P	PHE37
P	DMU309
W	SER46
W	TYR48
W	CYS49
W	TRP52

site_id	AL4
Number of Residues	15
Details	binding site for residue PEK P 307

Chain	Residue
A	SER279
B	CHD302
P	LYS157
P	HIS158
P	GLN161
P	THR168
P	TYR172
P	HOH446
P	HOH477
S	ALA1
T	ARG17
T	PHE21
T	GLY22
T	LEU23
T	CDL102

site_id	AL5
Number of Residues	5
Details	binding site for residue DMU P 308

Chain	Residue
P	TRP116
P	PRO117
P	TRP258
P	TRP259
P	SER261

site_id	AL6
Number of Residues	6
Details	binding site for residue DMU P 309

Chain	Residue
P	ASN38
P	SER39
P	THR41
P	DMU306
P	HOH411
W	TYR45

site_id	AL7
Number of Residues	6
Details	binding site for residue EDO P 310

Chain	Residue
O	GLY177
P	GLU111
P	HOH406
P	HOH413
P	HOH471
U	HOH220

site_id	AL8
Number of Residues	7
Details	binding site for residue EDO P 311

Chain	Residue
P	TRP146
P	SER150
P	HIS158
P	HOH429
S	ALA1
T	ARG14
T	ARG17

site_id	AL9
Number of Residues	5
Details	binding site for residue EDO P 312

Chain	Residue
P	ASN12
P	PRO13
P	HOH404
W	GLY17
W	PRO19

site_id	AM1
Number of Residues	14
Details	binding site for residue TGL Q 201

Chain	Residue
N	TRP334
N	PHE414
N	HOH705
O	LEU39
O	ILE42
O	THR47
O	LYS49
Q	ARG73
Q	THR75
Q	GLU77
Q	TRP78
Q	HOH315
V	ARG16
V	HIS20

site_id	AM2
Number of Residues	4
Details	binding site for residue EDO R 201

Chain	Residue
R	TYR18
R	LYS21
R	GLU28
R	HOH305

site_id	AM3
Number of Residues	4
Details	binding site for residue ZN S 101

Chain	Residue
S	CYS60
S	CYS62
S	CYS82
S	CYS85

site_id	AM4
Number of Residues	9
Details	binding site for residue EDO S 102

Chain	Residue
N	THR490
N	EDO611
N	HOH770
N	HOH850
S	SER67
S	THR68
S	VAL69
S	TRP71
S	HOH218

site_id	AM5
Number of Residues	6
Details	binding site for residue EDO S 103

Chain	Residue
S	PHE72
S	GLN80
S	ARG81
S	HOH204
S	HOH229
S	HOH236

site_id	AM6
Number of Residues	17
Details	binding site for residue PEK T 101

Chain	Residue
N	VAL155
N	ALA203
N	PGV609
P	TYR181
P	TYR182
P	ALA184
P	PHE186
P	THR187
P	ILE188
P	PHE198
T	TRP62
T	THR68
T	PHE69
T	PHE70
T	HIS71
T	ASN76
T	HOH212

site_id	AM7
Number of Residues	21
Details	binding site for residue CDL T 102

Chain	Residue
A	ILE286
A	ASP300
A	SER307
A	ILE311
B	ALA77
B	LEU78
B	LEU81
B	ARG82
B	TYR85
C	CHD301
C	PEK309
P	ASN125
P	LEU127
P	LEU131
P	VAL142
P	PEK307
T	SER27
T	CYS31
T	ASN34
T	LEU37
T	HIS38

site_id	AM8
Number of Residues	6
Details	binding site for residue EDO T 103

Chain	Residue
P	GLY120
T	ALA46
T	PHE47
T	ILE48
T	LEU53
T	ARG54

site_id	AM9
Number of Residues	11
Details	binding site for residue PGV U 101

Chain	Residue
C	DMU310
G	ALA1
N	ASP298
P	THR95
P	TRP99
P	HIS103
P	ALA107
P	CHD301
U	ASN22
U	HOH202
U	HOH212

site_id	AN1
Number of Residues	4
Details	binding site for residue CHD W 101

Chain	Residue
N	ILE3
W	TYR32
W	ARG33
W	THR37

site_id	AN2
Number of Residues	15
Details	binding site for residue TGL Y 101

Chain	Residue
N	PHE2
N	THR17
N	LEU21
N	PHE22
N	TRP25
N	PRO106
N	LEU113
N	PHE400
Y	ILE11
Y	PRO12
Y	PHE13
Y	SER14
Y	ARG20
Y	MET24
Y	PHE28

site_id	AN3
Number of Residues	2
Details	binding site for residue EDO Y 102

Chain	Residue
Y	HIS2
Y	TYR3

site_id	AN4
Number of Residues	7
Details	binding site for residue PGV Z 101

Chain	Residue
N	ASN406
N	THR408
N	TRP409
Q	PHE87
X	HIS10
Z	GLN15
Z	LEU19

site_id	AN5
Number of Residues	7
Details	binding site for residue DMU Z 102

Chain	Residue
Q	TRP98
Z	LEU27
Z	LEU28
Z	GLY31
Z	TRP32
Z	TYR35
Z	HIS36

site_id	AN6
Number of Residues	19
Details	binding site for Di-peptide HIS N 240 and TYR N 244

Chain	Residue
N	TRP236
N	PHE238
N	GLY239
N	PRO241
N	GLU242
N	VAL243
N	ILE245
N	LEU246
N	ILE247
N	LEU248
N	ILE280
N	GLY284
N	VAL287
N	HIS290
N	HEA603
N	CU604
N	AZI607
N	AZI608
N	HOH707

Functional Information from PROSITE/UniProt

site_id	PS00077
Number of Residues	56
Details	COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WFFGHPeVyililpgfgmishivtyysgkkepfgymgmvwammsigflgfivwa.HH

Chain	Residue	Details
A	TRP236-HIS291

site_id	PS00078
Number of Residues	49
Details	COX2 CO II and nitrous oxide reductase dinuclear copper centers signature. VlHswavpslglktdaipgrlnqttlmssrpglyygq......CseiCgsnHsfM

Chain	Residue	Details
B	VAL159-MET207

site_id	PS00848
Number of Residues	23
Details	COX5B_1 Cytochrome c oxidase subunit Vb, zinc binding region signature. VIWfwlhkgeaqrCpsCGthYKL

Chain	Residue	Details
F	VAL69-LEU91

site_id	PS01329
Number of Residues	18
Details	COX6A Cytochrome c oxidase subunit VIa signature. IRtKpFsWGDGnHTfFhN

Chain	Residue	Details
G	ILE55-ASN72

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	150
Details	TOPO_DOM: Mitochondrial matrix => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
D	ALA1-ASN76
N	SER262-GLY269
N	SER401-ASN406
N	LYS479-LYS514
Q	ALA1-ASN76
C	GLU153-ASP155
C	LYS224-HIS232
P	MET1-PRO15
P	PHE67-THR72
P	GLU153-ASP155
P	LYS224-HIS232
N	MET171-PRO182

site_id	SWS_FT_FI2
Number of Residues	50
Details	TRANSMEM: Helical => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
D	GLU77-TYR102
Q	GLU77-TYR102
F	LYS90
S	LYS37
S	LYS55
S	LYS90

site_id	SWS_FT_FI3
Number of Residues	88
Details	TOPO_DOM: Mitochondrial intermembrane => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
D	VAL103-LYS147
Q	VAL103-LYS147
C	ALA184-ASP190
C	TYR257-SER261
P	PHE35-MET40
P	LEU106-GLU128
P	ALA184-ASP190
P	TYR257-SER261

site_id	SWS_FT_FI4
Number of Residues	4
Details	MOD_RES: N6-succinyllysine; alternate => ECO:0000250\|UniProtKB:P19783

Chain	Residue	Details
D	LYS7
D	LYS38
Q	LYS7
Q	LYS38

site_id	SWS_FT_FI5
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0000250\|UniProtKB:P13073

Chain	Residue	Details
D	LYS31
O	CYS200
O	HIS204
O	MET207
Q	LYS31
B	GLU198
B	CYS200
B	HIS204
B	MET207
O	HIS161
O	CYS196
O	GLU198

site_id	SWS_FT_FI6
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0000250\|UniProtKB:P10888

Chain	Residue	Details
D	SER34
D	SER36
Q	SER34
Q	SER36
N	ARG213-ASP227
N	VAL287-ASP298

site_id	SWS_FT_FI7
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0000250\|UniProtKB:P19783

Chain	Residue	Details
D	LYS45
Q	LYS45

site_id	SWS_FT_FI8
Number of Residues	64
Details	TRANSMEM: Helical; Name=VI => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
C	GLY191-LEU223
P	GLY191-LEU223

site_id	SWS_FT_FI9
Number of Residues	46
Details	TRANSMEM: Helical; Name=VII => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
C	PHE233-ILE256
P	PHE233-ILE256

site_id	SWS_FT_FI10
Number of Residues	32
Details	TRANSMEM: Helical; Name=VII => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	TYR270-ILE286
N	TYR270-ILE286

site_id	SWS_FT_FI11
Number of Residues	56
Details	TRANSMEM: Helical; Name=VIII => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	VAL299-LEU327
N	VAL299-LEU327

site_id	SWS_FT_FI12
Number of Residues	14
Details	TOPO_DOM: Mitochondrial matrix => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	HIS328-SER335
N	HIS328-SER335

site_id	SWS_FT_FI13
Number of Residues	42
Details	TRANSMEM: Helical; Name=IX => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	PRO336-VAL357
N	PRO336-VAL357

site_id	SWS_FT_FI14
Number of Residues	48
Details	TOPO_DOM: Mitochondrial intermembrane => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	LEU358-THR370
A	SER434-ALA446
N	LEU358-THR370
N	SER434-ALA446

site_id	SWS_FT_FI15
Number of Residues	58
Details	TRANSMEM: Helical; Name=X => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	TYR371-PHE400
N	TYR371-PHE400

site_id	SWS_FT_FI16
Number of Residues	52
Details	TRANSMEM: Helical; Name=XI => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	ASP407-LEU433
N	ASP407-LEU433

site_id	SWS_FT_FI17
Number of Residues	62
Details	TRANSMEM: Helical; Name=XII => ECO:0000269\|PubMed:27605664

Chain	Residue	Details
A	TYR447-SER478
N	TYR447-SER478

site_id	SWS_FT_FI18
Number of Residues	6
Details	BINDING: BINDING => ECO:0000269\|PubMed:27605664, ECO:0000305\|PubMed:23537388

Chain	Residue	Details
A	GLU40
A	GLY45
A	SER441
N	GLU40
N	GLY45
N	SER441

site_id	SWS_FT_FI19
Number of Residues	6
Details	BINDING: axial binding residue => ECO:0000269\|PubMed:20385840, ECO:0000269\|PubMed:8638158

Chain	Residue	Details
A	HIS61
A	HIS376
A	HIS378
N	HIS61
N	HIS376
N	HIS378

site_id	SWS_FT_FI20
Number of Residues	10
Details	BINDING: BINDING => ECO:0000269\|PubMed:20385840, ECO:0000269\|PubMed:8638158

Chain	Residue	Details
A	HIS240
N	ASP369
A	HIS290
A	HIS291
A	HIS368
A	ASP369
N	HIS240
N	HIS290
N	HIS291
N	HIS368

site_id	SWS_FT_FI21
Number of Residues	2
Details	BINDING: BINDING => ECO:0000305

Chain	Residue	Details
A	TYR244
N	TYR244

site_id	SWS_FT_FI22
Number of Residues	2
Details	MOD_RES: N-formylmethionine => ECO:0000269\|PubMed:2165784

Chain	Residue	Details
A	FME1
N	FME1

site_id	SWS_FT_FI23
Number of Residues	4
Details	CROSSLNK: 1'-histidyl-3'-tyrosine (His-Tyr) => ECO:0000269\|PubMed:10338009

Chain	Residue	Details
A	HIS240
A	TYR244
N	HIS240
N	TYR244

Catalytic Information from CSA

site_id	MCSA1
Number of Residues	14
Details	M-CSA 124

Chain	Residue	Details
A	HIS61	metal ligand
A	HIS290	metal ligand
A	HIS291	metal ligand, proton acceptor, proton donor
A	THR316	proton acceptor, proton donor, proton relay
A	LYS319	proton acceptor, proton donor, proton relay
A	ARG438	proton acceptor, proton donor, proton relay
A	ASP91	proton acceptor, proton donor, proton relay
A	TRP126	proton acceptor, proton donor, proton relay
A	SER156	proton acceptor, proton donor, proton relay
A	SER157	proton acceptor, proton donor, proton relay
A	HIS240	covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser
A	GLU242	proton acceptor, proton donor, proton relay
A	TYR244	covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor
A	SER255	proton acceptor, proton donor, proton relay

site_id	MCSA2
Number of Residues	14
Details	M-CSA 124

Chain	Residue	Details
N	HIS61	metal ligand
N	HIS290	metal ligand
N	HIS291	metal ligand, proton acceptor, proton donor
N	THR316	proton acceptor, proton donor, proton relay
N	LYS319	proton acceptor, proton donor, proton relay
N	ARG438	proton acceptor, proton donor, proton relay
N	ASP91	proton acceptor, proton donor, proton relay
N	TRP126	proton acceptor, proton donor, proton relay
N	SER156	proton acceptor, proton donor, proton relay
N	SER157	proton acceptor, proton donor, proton relay
N	HIS240	covalently attached, electrostatic stabiliser, metal ligand, radical stabiliser
N	GLU242	proton acceptor, proton donor, proton relay
N	TYR244	covalently attached, hydrogen radical donor, proton acceptor, proton donor, proton relay, single electron acceptor
N	SER255	proton acceptor, proton donor, proton relay

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)