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5ZC0

Crystal structure of Xenopus embryonic epidermal lectin in complex with Samarium ions

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0030133cellular_componenttransport vesicle
A0030141cellular_componentsecretory granule
A0030246molecular_functioncarbohydrate binding
A0031410cellular_componentcytoplasmic vesicle
A0034214biological_processprotein hexamerization
A0046872molecular_functionmetal ion binding
A0070492molecular_functionoligosaccharide binding
B0005509molecular_functioncalcium ion binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0030133cellular_componenttransport vesicle
B0030141cellular_componentsecretory granule
B0030246molecular_functioncarbohydrate binding
B0031410cellular_componentcytoplasmic vesicle
B0034214biological_processprotein hexamerization
B0046872molecular_functionmetal ion binding
B0070492molecular_functionoligosaccharide binding
C0005509molecular_functioncalcium ion binding
C0005576cellular_componentextracellular region
C0005615cellular_componentextracellular space
C0030133cellular_componenttransport vesicle
C0030141cellular_componentsecretory granule
C0030246molecular_functioncarbohydrate binding
C0031410cellular_componentcytoplasmic vesicle
C0034214biological_processprotein hexamerization
C0046872molecular_functionmetal ion binding
C0070492molecular_functionoligosaccharide binding
D0005509molecular_functioncalcium ion binding
D0005576cellular_componentextracellular region
D0005615cellular_componentextracellular space
D0030133cellular_componenttransport vesicle
D0030141cellular_componentsecretory granule
D0030246molecular_functioncarbohydrate binding
D0031410cellular_componentcytoplasmic vesicle
D0034214biological_processprotein hexamerization
D0046872molecular_functionmetal ion binding
D0070492molecular_functionoligosaccharide binding
E0005509molecular_functioncalcium ion binding
E0005576cellular_componentextracellular region
E0005615cellular_componentextracellular space
E0030133cellular_componenttransport vesicle
E0030141cellular_componentsecretory granule
E0030246molecular_functioncarbohydrate binding
E0031410cellular_componentcytoplasmic vesicle
E0034214biological_processprotein hexamerization
E0046872molecular_functionmetal ion binding
E0070492molecular_functionoligosaccharide binding
F0005509molecular_functioncalcium ion binding
F0005576cellular_componentextracellular region
F0005615cellular_componentextracellular space
F0030133cellular_componenttransport vesicle
F0030141cellular_componentsecretory granule
F0030246molecular_functioncarbohydrate binding
F0031410cellular_componentcytoplasmic vesicle
F0034214biological_processprotein hexamerization
F0046872molecular_functionmetal ion binding
F0070492molecular_functionoligosaccharide binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 401
ChainResidue
AGLU116
AASN118
AGLY121
AASP127
AHOH508
AHOH525

site_idAC2
Number of Residues6
Detailsbinding site for residue CA A 402
ChainResidue
AASP311
AHOH501
AHOH530
AHIS115
AGLY126
AASP162

site_idAC3
Number of Residues7
Detailsbinding site for residue SM A 403
ChainResidue
AASN289
AGLU291
AGLU303
AHOH503
AHOH521
AHOH528
AHOH531

site_idAC4
Number of Residues3
Detailsbinding site for residue SM A 404
ChainResidue
AGLU172
AGLY209
AGLU214

site_idAC5
Number of Residues4
Detailsbinding site for residue SM A 405
ChainResidue
AGLU207
AHOH509
AHOH523
AHOH532

site_idAC6
Number of Residues6
Detailsbinding site for residue CA B 401
ChainResidue
BGLU116
BASN118
BGLY121
BASP127
BHOH508
BHOH518

site_idAC7
Number of Residues6
Detailsbinding site for residue CA B 402
ChainResidue
BHIS115
BGLY126
BASP162
BASP311
BHOH509
BHOH520

site_idAC8
Number of Residues6
Detailsbinding site for residue SM B 403
ChainResidue
BASN289
BGLU291
BGLU303
BHOH502
BHOH503
BHOH519

site_idAC9
Number of Residues3
Detailsbinding site for residue SM B 404
ChainResidue
BGLU172
BGLY209
BGLU214

site_idAD1
Number of Residues3
Detailsbinding site for residue SM B 405
ChainResidue
BGLU207
BHOH507
BHOH513

site_idAD2
Number of Residues1
Detailsbinding site for residue SM B 406
ChainResidue
BGLU90

site_idAD3
Number of Residues1
Detailsbinding site for residue SM B 407
ChainResidue
BGLU90

site_idAD4
Number of Residues6
Detailsbinding site for residue CA C 401
ChainResidue
CGLU116
CASN118
CGLY121
CASP127
CHOH502
CHOH507

site_idAD5
Number of Residues6
Detailsbinding site for residue CA C 402
ChainResidue
CHIS115
CGLY126
CASP162
CASP311
CHOH503
CHOH525

site_idAD6
Number of Residues7
Detailsbinding site for residue SM C 403
ChainResidue
CASN289
CGLU291
CGLU303
CHOH508
CHOH516
CHOH526
CHOH529

site_idAD7
Number of Residues3
Detailsbinding site for residue SM C 404
ChainResidue
CGLU172
CGLY209
CGLU214

site_idAD8
Number of Residues2
Detailsbinding site for residue SM C 405
ChainResidue
CGLU207
CHOH528

site_idAD9
Number of Residues2
Detailsbinding site for residue SM C 407
ChainResidue
CGLU90
CASP91

site_idAE1
Number of Residues6
Detailsbinding site for residue CA D 401
ChainResidue
DGLU116
DASN118
DGLY121
DASP127
DHOH507
DHOH517

site_idAE2
Number of Residues6
Detailsbinding site for residue CA D 402
ChainResidue
DHIS115
DGLY126
DASP162
DASP311
DHOH504
DHOH511

site_idAE3
Number of Residues7
Detailsbinding site for residue SM D 403
ChainResidue
DASN289
DGLU291
DGLU303
DHOH501
DHOH503
DHOH524
DHOH525

site_idAE4
Number of Residues3
Detailsbinding site for residue SM D 404
ChainResidue
DGLU214
DGLU172
DGLY209

site_idAE5
Number of Residues2
Detailsbinding site for residue SM D 406
ChainResidue
DGLU90
DASP91

site_idAE6
Number of Residues6
Detailsbinding site for residue CA E 401
ChainResidue
EGLU116
EASN118
EGLY121
EASP127
EHOH516
EHOH517

site_idAE7
Number of Residues6
Detailsbinding site for residue CA E 402
ChainResidue
EHIS115
EGLY126
EASP162
EASP311
EHOH519
EHOH520

site_idAE8
Number of Residues7
Detailsbinding site for residue SM E 403
ChainResidue
EASN289
EGLU291
EGLU303
EHOH501
EHOH503
EHOH510
EHOH525

site_idAE9
Number of Residues3
Detailsbinding site for residue SM E 404
ChainResidue
EGLU172
EGLY209
EGLU214

site_idAF1
Number of Residues1
Detailsbinding site for residue SM E 405
ChainResidue
EGLU90

site_idAF2
Number of Residues2
Detailsbinding site for residue SM E 406
ChainResidue
EGLU90
EASP91

site_idAF3
Number of Residues6
Detailsbinding site for residue CA F 401
ChainResidue
FGLU116
FASN118
FGLY121
FASP127
FHOH507
FHOH518

site_idAF4
Number of Residues6
Detailsbinding site for residue CA F 402
ChainResidue
FHIS115
FGLY126
FASP162
FASP311
FHOH501
FHOH520

site_idAF5
Number of Residues7
Detailsbinding site for residue SM F 403
ChainResidue
FASN289
FGLU291
FGLU303
FHOH502
FHOH519
FHOH526
FHOH527

site_idAF6
Number of Residues3
Detailsbinding site for residue SM F 404
ChainResidue
FGLU172
FGLY209
FGLU214

site_idAF7
Number of Residues1
Detailsbinding site for residue SM F 406
ChainResidue
FGLU90

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues66
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"26755729","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4WMO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4WN0","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"26755729","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"15537792","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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