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5Z9M

Bacterial GyrB ATPase domain in complex with a chemical fragment

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue BZ2 A 301
ChainResidue
AGLU50
AARG76
AGLY77
AARG136

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 302
ChainResidue
AARG204
AGLU213
AHIS215

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 303
ChainResidue
ALYS208
AHOH406
AHOH412
AHIS64
AARG168

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 304
ChainResidue
AARG192
ASO4305
BALA152
BPRO153

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 305
ChainResidue
AGLU193
ASO4304
BVAL88
BGLU92

site_idAC6
Number of Residues2
Detailsbinding site for residue SO4 A 306
ChainResidue
AARG206
ALYS208

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 307
ChainResidue
AARG22
APRO23
AGLY24

site_idAC8
Number of Residues1
Detailsbinding site for residue SO4 A 308
ChainResidue
AHIS83

site_idAC9
Number of Residues2
Detailsbinding site for residue SO4 A 309
ChainResidue
AARG142
AHOH404

site_idAD1
Number of Residues4
Detailsbinding site for residue BZ2 B 301
ChainResidue
BGLU50
BARG76
BGLY77
BARG136

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 B 302
ChainResidue
ATHR177
AASN178
BLYS129
BARG142

site_idAD3
Number of Residues2
Detailsbinding site for residue SO4 B 303
ChainResidue
BARG204
BHIS215

site_idAD4
Number of Residues2
Detailsbinding site for residue SO4 B 304
ChainResidue
BARG206
BHOH405

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor (ATPase activity) => ECO:0000305|PubMed:10734094, ECO:0000305|PubMed:8248233
ChainResidueDetails
AGLU42
BGLU42

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:10734094, ECO:0000269|PubMed:25202966, ECO:0000269|PubMed:25849408
ChainResidueDetails
AASN46
BLEU115
AASP73
AGLY102
ATYR109
ALEU115
BASN46
BASP73
BGLY102
BTYR109

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:25849408
ChainResidueDetails
AILE94
BALA100
BLYS103
BASP105
BGLY117
BSER121
AVAL97
AALA100
ALYS103
AASP105
AGLY117
ASER121
BILE94
BVAL97

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PDB entries from 2024-07-24

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