5YVZ
Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate and Fe(III)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005886 | cellular_component | plasma membrane |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue FE A 401 |
| Chain | Residue |
| A | HIS146 |
| A | ASP148 |
| A | HIS260 |
| A | AKG402 |
| A | HOH582 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue AKG A 402 |
| Chain | Residue |
| A | ARG162 |
| A | PHE164 |
| A | ARG174 |
| A | TRP176 |
| A | HIS260 |
| A | VAL262 |
| A | FE401 |
| A | HOH514 |
| A | ARG127 |
| A | ASP142 |
| A | HIS146 |
| A | ASP148 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 403 |
| Chain | Residue |
| A | GLY40 |
| A | GLY179 |
| A | GLU180 |
| A | VAL258 |
| A | LEU259 |
| A | HOH548 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue PG4 A 404 |
| Chain | Residue |
| A | ILE178 |
| A | GLY179 |
| A | LEU193 |
| A | TYR220 |
| A | GLN240 |
| A | VAL241 |
| A | LEU295 |
| A | HOH552 |
| A | HOH612 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue PG4 A 405 |
| Chain | Residue |
| A | GLY212 |
| A | TYR213 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue PG4 A 406 |
| Chain | Residue |
| A | LEU57 |
| A | PHE202 |
| A | TYR205 |
| A | HOH517 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue PG4 A 407 |
| Chain | Residue |
| A | ARG76 |
| A | ALA122 |
| A | ARG123 |
| A | SER153 |
| A | PRO154 |
| A | ILE160 |
| A | ARG162 |
| A | HIS274 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue ACT A 408 |
| Chain | Residue |
| A | ARG214 |
| A | LEU222 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 410 |
| Chain | Residue |
| A | THR79 |
| A | LYS81 |
| A | LYS276 |
| A | ASN278 |
| A | SER304 |
| A | HOH599 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"30092253","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5YW0","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"30092253","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"5Y9I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5Y9X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5Y9Y","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YKA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YVZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YW0","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"30092253","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5Y9X","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YVZ","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"30092253","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5Y9Y","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5YW0","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Site: {"description":"Important for activity","evidences":[{"source":"PubMed","id":"30092253","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
