5YUY
DNA polymerase IV - DNA ternary complex 9
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0000731 | biological_process | DNA synthesis involved in DNA repair |
A | 0003677 | molecular_function | DNA binding |
A | 0003684 | molecular_function | damaged DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0006281 | biological_process | DNA repair |
A | 0006974 | biological_process | DNA damage response |
A | 0008296 | molecular_function | 3'-5'-DNA exonuclease activity |
A | 0009432 | biological_process | SOS response |
A | 0042276 | biological_process | error-prone translesion synthesis |
A | 0046872 | molecular_function | metal ion binding |
A | 0070987 | biological_process | error-free translesion synthesis |
F | 0000287 | molecular_function | magnesium ion binding |
F | 0000731 | biological_process | DNA synthesis involved in DNA repair |
F | 0003677 | molecular_function | DNA binding |
F | 0003684 | molecular_function | damaged DNA binding |
F | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
F | 0005515 | molecular_function | protein binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0006260 | biological_process | DNA replication |
F | 0006261 | biological_process | DNA-templated DNA replication |
F | 0006281 | biological_process | DNA repair |
F | 0006974 | biological_process | DNA damage response |
F | 0008296 | molecular_function | 3'-5'-DNA exonuclease activity |
F | 0009432 | biological_process | SOS response |
F | 0042276 | biological_process | error-prone translesion synthesis |
F | 0046872 | molecular_function | metal ion binding |
F | 0070987 | biological_process | error-free translesion synthesis |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue MG F 901 |
Chain | Residue |
F | ASP8 |
F | MET9 |
F | ASP103 |
F | MG902 |
F | DPO903 |
H | DT874 |
H | TTP901 |
site_id | AC2 |
Number of Residues | 8 |
Details | binding site for residue MG F 902 |
Chain | Residue |
F | GLU104 |
F | MG901 |
F | HOH1002 |
H | DC873 |
H | DT874 |
H | TTP901 |
F | ASP8 |
F | ASP103 |
site_id | AC3 |
Number of Residues | 15 |
Details | binding site for residue DPO F 903 |
Chain | Residue |
F | ASP8 |
F | MET9 |
F | ASP10 |
F | CYS11 |
F | PHE12 |
F | THR43 |
F | ARG49 |
F | ASP103 |
F | LYS157 |
F | MG901 |
F | HOH1010 |
F | HOH1042 |
F | HOH1046 |
H | DT874 |
H | TTP901 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue MG A 901 |
Chain | Residue |
A | ASP8 |
A | MET9 |
A | ASP103 |
A | MG902 |
A | DPO903 |
C | DT874 |
C | TTP901 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue MG A 902 |
Chain | Residue |
A | ASP8 |
A | ASP103 |
A | GLU104 |
A | MG901 |
A | HOH1075 |
C | DC873 |
C | DT874 |
C | TTP901 |
site_id | AC6 |
Number of Residues | 15 |
Details | binding site for residue DPO A 903 |
Chain | Residue |
A | ASP8 |
A | MET9 |
A | ASP10 |
A | CYS11 |
A | PHE12 |
A | THR43 |
A | ARG49 |
A | ASP103 |
A | LYS157 |
A | MG901 |
A | HOH1022 |
A | HOH1103 |
C | DT874 |
C | TTP901 |
C | HOH1034 |
site_id | AC7 |
Number of Residues | 31 |
Details | binding site for Di-nucleotide TTP C 901 and DC C 873 |
Chain | Residue |
A | ASP8 |
A | MET9 |
A | ASP10 |
A | CYS11 |
A | PHE12 |
A | PHE13 |
A | SER42 |
A | THR43 |
A | ARG49 |
A | SER55 |
A | ASP103 |
A | GLU104 |
A | LYS150 |
A | LYS157 |
A | MG901 |
A | MG902 |
A | DPO903 |
A | HOH1022 |
B | DA840 |
B | DG841 |
B | DG842 |
C | DC872 |
C | DT874 |
C | HOH1017 |
C | HOH1020 |
C | HOH1025 |
C | HOH1034 |
C | HOH1041 |
C | HOH1044 |
C | HOH1045 |
C | HOH1052 |
site_id | AC8 |
Number of Residues | 31 |
Details | binding site for Di-nucleotide TTP H 901 and DC H 873 |
Chain | Residue |
F | ARG49 |
F | SER101 |
F | ASP103 |
F | GLU104 |
F | LYS150 |
F | LYS157 |
F | MG901 |
F | MG902 |
F | DPO903 |
F | HOH1010 |
F | HOH1023 |
F | HOH1046 |
G | DA840 |
G | DG841 |
G | DG842 |
H | DC872 |
H | DT874 |
H | HOH1004 |
H | HOH1010 |
H | HOH1012 |
H | HOH1018 |
H | HOH1024 |
H | HOH1028 |
F | ASP8 |
F | MET9 |
F | ASP10 |
F | CYS11 |
F | PHE12 |
F | PHE13 |
F | SER42 |
F | THR43 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: ACT_SITE => ECO:0000250 |
Chain | Residue | Details |
F | GLU104 | |
A | GLU104 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
F | ASP8 | |
F | ASP103 | |
A | ASP8 | |
A | ASP103 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | SITE: Substrate discrimination => ECO:0000250 |
Chain | Residue | Details |
F | PHE13 | |
A | PHE13 |