5YU4
Structural basis for recognition of L-lysine, L-ornithine, and L-2,4-diamino butyric acid by lysine cyclodeaminase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0008473 | molecular_function | ornithine cyclodeaminase activity |
| A | 0016829 | molecular_function | lyase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0008473 | molecular_function | ornithine cyclodeaminase activity |
| B | 0016829 | molecular_function | lyase activity |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0008473 | molecular_function | ornithine cyclodeaminase activity |
| C | 0016829 | molecular_function | lyase activity |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0008473 | molecular_function | ornithine cyclodeaminase activity |
| D | 0016829 | molecular_function | lyase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue NA A 401 |
| Chain | Residue |
| A | ALA232 |
| A | GLY234 |
| A | GLY265 |
| A | ASP300 |
| A | SER301 |
| A | HOH592 |
| site_id | AC2 |
| Number of Residues | 34 |
| Details | binding site for residue NAD A 402 |
| Chain | Residue |
| A | THR118 |
| A | ARG121 |
| A | THR122 |
| A | ILE144 |
| A | GLY145 |
| A | GLY147 |
| A | ALA148 |
| A | GLN149 |
| A | ASP170 |
| A | THR171 |
| A | HIS175 |
| A | ALA208 |
| A | THR209 |
| A | SER210 |
| A | VAL211 |
| A | VAL218 |
| A | VAL233 |
| A | ALA235 |
| A | ASP236 |
| A | LYS240 |
| A | SER301 |
| A | THR302 |
| A | GLY303 |
| A | DAB403 |
| A | HOH534 |
| A | HOH554 |
| A | HOH557 |
| A | HOH562 |
| A | HOH574 |
| A | HOH575 |
| A | HOH622 |
| A | TYR81 |
| A | THR93 |
| A | ILE94 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | binding site for residue DAB A 403 |
| Chain | Residue |
| A | ARG49 |
| A | GLU63 |
| A | MET65 |
| A | LYS77 |
| A | ILE94 |
| A | ARG121 |
| A | ALA235 |
| A | THR302 |
| A | GLY303 |
| A | NAD402 |
| A | HOH555 |
| A | HOH612 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue NA B 401 |
| Chain | Residue |
| B | ALA232 |
| B | GLY234 |
| B | GLY265 |
| B | ASP300 |
| B | SER301 |
| site_id | AC5 |
| Number of Residues | 34 |
| Details | binding site for residue NAD B 402 |
| Chain | Residue |
| A | LEU338 |
| B | TYR81 |
| B | THR93 |
| B | ILE94 |
| B | ARG121 |
| B | THR122 |
| B | GLY147 |
| B | ALA148 |
| B | GLN149 |
| B | ASP170 |
| B | THR171 |
| B | HIS175 |
| B | ALA208 |
| B | THR209 |
| B | SER210 |
| B | VAL211 |
| B | VAL218 |
| B | VAL233 |
| B | GLY234 |
| B | ALA235 |
| B | ASP236 |
| B | LYS240 |
| B | SER301 |
| B | THR302 |
| B | GLY303 |
| B | DAB403 |
| B | HOH539 |
| B | HOH576 |
| B | HOH578 |
| B | HOH584 |
| B | HOH592 |
| B | HOH604 |
| B | HOH654 |
| B | HOH670 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | binding site for residue DAB B 403 |
| Chain | Residue |
| B | NAD402 |
| B | HOH600 |
| B | ARG49 |
| B | GLU63 |
| B | MET65 |
| B | LYS77 |
| B | ARG121 |
| B | ALA235 |
| B | THR302 |
| B | GLY303 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue NA C 401 |
| Chain | Residue |
| C | ALA232 |
| C | GLY234 |
| C | ASP300 |
| C | SER301 |
| C | HOH557 |
| site_id | AC8 |
| Number of Residues | 35 |
| Details | binding site for residue NAD C 402 |
| Chain | Residue |
| C | TYR81 |
| C | THR93 |
| C | ILE94 |
| C | THR118 |
| C | ARG121 |
| C | THR122 |
| C | GLY145 |
| C | GLY147 |
| C | ALA148 |
| C | GLN149 |
| C | ASP170 |
| C | THR171 |
| C | HIS175 |
| C | ALA208 |
| C | THR209 |
| C | SER210 |
| C | VAL211 |
| C | VAL233 |
| C | GLY234 |
| C | ALA235 |
| C | ASP236 |
| C | LYS240 |
| C | SER301 |
| C | THR302 |
| C | GLY303 |
| C | DAB403 |
| C | HOH539 |
| C | HOH556 |
| C | HOH571 |
| C | HOH582 |
| C | HOH587 |
| C | HOH591 |
| C | HOH681 |
| C | HOH692 |
| D | LEU338 |
| site_id | AC9 |
| Number of Residues | 10 |
| Details | binding site for residue DAB C 403 |
| Chain | Residue |
| C | ARG49 |
| C | GLU63 |
| C | LYS77 |
| C | ILE94 |
| C | ARG121 |
| C | ALA235 |
| C | THR302 |
| C | GLY303 |
| C | NAD402 |
| C | HOH508 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue NA D 401 |
| Chain | Residue |
| D | ALA232 |
| D | GLY234 |
| D | GLY265 |
| D | ASP300 |
| D | SER301 |
| site_id | AD2 |
| Number of Residues | 36 |
| Details | binding site for residue NAD D 402 |
| Chain | Residue |
| C | LEU338 |
| D | TYR81 |
| D | THR93 |
| D | ILE94 |
| D | ARG121 |
| D | THR122 |
| D | ILE144 |
| D | GLY145 |
| D | GLY147 |
| D | ALA148 |
| D | GLN149 |
| D | ASP170 |
| D | THR171 |
| D | HIS175 |
| D | ALA208 |
| D | THR209 |
| D | SER210 |
| D | VAL211 |
| D | VAL218 |
| D | VAL233 |
| D | GLY234 |
| D | ALA235 |
| D | ASP236 |
| D | LYS240 |
| D | SER301 |
| D | THR302 |
| D | GLY303 |
| D | DAB403 |
| D | HOH518 |
| D | HOH527 |
| D | HOH532 |
| D | HOH553 |
| D | HOH556 |
| D | HOH579 |
| D | HOH656 |
| D | HOH660 |
| site_id | AD3 |
| Number of Residues | 10 |
| Details | binding site for residue DAB D 403 |
| Chain | Residue |
| D | ARG49 |
| D | GLU63 |
| D | MET65 |
| D | LYS77 |
| D | ARG121 |
| D | ALA235 |
| D | THR302 |
| D | GLY303 |
| D | NAD402 |
| D | HOH593 |
